PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53690.1.p
Common NameBRADI_2g53690, LOC100844657
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 251aa    MW: 26212.5 Da    PI: 6.0841
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.28.8e-41571561100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C++apyf  ++p+kfa+vhk+FGasnv+k+l ++pe er da++slvyeA+ r+rdPvyG++g i+ lqqq++ l+ae
  Bradi2g53690.1.p  57 PCAACKLLRRRCAHECPFAPYFSPHEPNKFAAVHKVFGASNVSKMLLEVPEAERGDAANSLVYEANLRLRDPVYGCMGAISVLQQQVSALEAE 149
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++++e
  Bradi2g53690.1.p 150 LEAVRAE 156
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.21856157IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-4157154IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSTERERLDE IGKKIKREPD GAAAAAGGFV VASSSSPVDH HVSRRMVLGG APNTATPCAA  60
CKLLRRRCAH ECPFAPYFSP HEPNKFAAVH KVFGASNVSK MLLEVPEAER GDAANSLVYE  120
ANLRLRDPVY GCMGAISVLQ QQVSALEAEL EAVRAEIFKH RYRQASSLMA GGDDAGFMQA  180
PAMAMPPVHA ADDDVVSVAA AAGQGQDVIV AGIPGTPPTV YAATGQQPSS STAADDYGSL  240
NTSEHGAYFG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-42521606114LOB family transfactor Ramosa2.1
5ly0_B3e-42521606114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7955611e-146AY795561.1 Triticum aestivum LOB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233540.20.0LOB domain-containing protein 15
SwissprotQ8L5T51e-67LBD15_ARATH; LOB domain-containing protein 15
TrEMBLI1HSY40.0I1HSY4_BRADI; Uncharacterized protein
STRINGBRADI2G53690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-63LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]