PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53760.1.p
Common NameBRADI_2g53760, LOC100845575
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 577aa    MW: 61163.6 Da    PI: 7.075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32229285259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+s  +++++ei+Y+g+Hnh 
  Bradi2g53760.1.p 229 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVETSL-EGQITEIVYKGTHNHA 285
                       8****************************************.***************7 PP
2WRKY105.52.7e-33397455159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  Bradi2g53760.1.p 397 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASQDLRAVITTYEGKHNHD 455
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27220287IPR003657WRKY domain
SuperFamilySSF1182902.88E-24222287IPR003657WRKY domain
PROSITE profilePS5081122.171223287IPR003657WRKY domain
SMARTSM007745.2E-34228286IPR003657WRKY domain
PfamPF031063.6E-24229284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-37382457IPR003657WRKY domain
SuperFamilySSF1182903.14E-29389457IPR003657WRKY domain
PROSITE profilePS5081138.17392457IPR003657WRKY domain
SMARTSM007742.2E-38397456IPR003657WRKY domain
PfamPF031061.7E-25398455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MTTSSSGSIE TSANSRPGSF SFANASFTDI LGGSAGGGSA SGGYKAMTPP SLPLSPSLMS  60
PSSYFNMPAG MNLADFLDSP VLLTSSIFPS PTTGAFASQQ FNWRPEAPVP SAEQGGKDEQ  120
QRQSAYSDFS FQTALQGKNE EQAAQTTTTT FQPPVPLAPQ QGEEAYRGQQ QQPWGGYQQP  180
AAAGMEASAN NPASFTAAPP LQATSSEMAP HAQGGGAYRQ THSQRRSSDD GYNWRKYGQK  240
QVKGSENPRS YYKCTFPSCP TKKKVETSLE GQITEIVYKG THNHAKPLNT RRSSGAGGAA  300
AQVLQSGAGG DTSEHSFGGG VSGGAHVTTP ENSSASFGDD EIGGASSPRA GNDLDDDEPD  360
SKRWRKDGDG EGIGVGGNRT VREPRVVVQT MSDIDILDDG YRWRKYGQKV VKGNPNPRSY  420
YKCTTVGCPV RKHVERASQD LRAVITTYEG KHNHDVPAAR GSAALYRPAP RPDMAAAAAS  480
SHFMANNQPP AMPYQLTTNN AGTQYAPRPD GFGGQSQGSF GFGGGFGFSG SGFDNPAGSY  540
MSQHQHQQRH NDAMHASAGA KEEPREDMFF QHPSQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36220458878Probable WRKY transcription factor 4
2lex_A4e-36220458878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53760.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564512.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLI1HSZ20.0I1HSZ2_BRADI; Uncharacterized protein
STRINGBRADI2G53760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-97WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]