PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g54200.2.p
Common NameBRADI_2g54200, LOC100831223
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 169aa    MW: 18061.2 Da    PI: 7.0569
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g54200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.53.9e-5820116197
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrktingddllwa+atlGfe+yveplk+yl+kyr++
  Bradi2g54200.2.p  20 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYVEPLKIYLHKYRDM 112
                       69******************************************************************************************* PP

             NF-YB  94 egek 97 
                       eg++
  Bradi2g54200.2.p 113 EGDS 116
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-5419125IPR009072Histone-fold
SuperFamilySSF471132.64E-4023124IPR009072Histone-fold
PfamPF008081.3E-282690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-225472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.6E-227391No hitNo description
PRINTSPR006152.6E-2292110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MADGGSHDSG SPRGGGGGGV REQDRFLPIA NISRIMKKAV PANGKIAKDA KETLQECVSE  60
FISFVTSEAS DKCQKEKRKT INGDDLLWAM ATLGFEEYVE PLKIYLHKYR DMEGDSKLTS  120
KSGDGSVKKD TIGAHGGASS SNAQAMVQHG AYPQGMGYMQ PQYHNGDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4819111193NF-YB
4awl_B4e-4819111294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-4819111294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g54200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093930.0BT009393.1 Triticum aestivum clone wlm96.pk037.k9:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564550.11e-123nuclear transcription factor Y subunit B-3
SwissprotQ5QMG36e-93NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLI1HT461e-122I1HT46_BRADI; Uncharacterized protein
STRINGBRADI2G54200.11e-123(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.37e-69nuclear factor Y, subunit B8