PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g54200.4.p
Common NameBRADI_2g54200
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 157aa    MW: 16731.7 Da    PI: 8.4334
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g54200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB133.27.9e-4220104197
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdrflPian+srimkk++Pan+ki+kdaket+q            easdkcq+ekrktingddllwa+atlGfe+yveplk+yl+kyr++
  Bradi2g54200.4.p  20 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQ------------EASDKCQKEKRKTINGDDLLWAMATLGFEEYVEPLKIYLHKYRDM 100
                       69********************************98............69******************************************* PP

             NF-YB  94 egek 97 
                       eg++
  Bradi2g54200.4.p 101 EGDS 104
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.2E-3819113IPR009072Histone-fold
SuperFamilySSF471133.05E-3023112IPR009072Histone-fold
PfamPF008082.0E-92657IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.6E-126179No hitNo description
PRINTSPR006157.6E-128098No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MADGGSHDSG SPRGGGGGGV REQDRFLPIA NISRIMKKAV PANGKIAKDA KETLQEASDK  60
CQKEKRKTIN GDDLLWAMAT LGFEEYVEPL KIYLHKYRDM EGDSKLTSKS GDGSVKKDTI  120
GAHGGASSSN AQAMVQHGAY PQGMGYMQPQ YHNGDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-351999193NF-YB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g54200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093931e-112BT009393.1 Triticum aestivum clone wlm96.pk037.k9:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564550.11e-104nuclear transcription factor Y subunit B-3
SwissprotQ5QMG31e-79NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A0Q3KH501e-111A0A0Q3KH50_BRADI; Uncharacterized protein
STRINGBRADI2G54200.11e-104(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-55nuclear factor Y, subunit B8