PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g54500.1.p
Common NameBRADI_2g54500, LOC100822532
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 189aa    MW: 20646 Da    PI: 5.8337
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g54500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00115880123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k+F++   L  H  +H
  Bradi2g54500.1.p 58 FECKTCSKRFPSFQALGGHRTSH 80
                      89**********99998888777 PP
2zf-C2H211.90.00068108130123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cg  Fs    L  H+r+H
  Bradi2g54500.1.p 108 HECAVCGLEFSMGQALGGHMRRH 130
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-125780IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-757130No hitNo description
PROSITE profilePS5015710.4295885IPR007087Zinc finger, C2H2
SMARTSM003550.185880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4106133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-11107132IPR007087Zinc finger, C2H2
SMARTSM003550.89108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTLTREEAQE SKEMNDQQQS LRVHADALLS LSSSPADADK RQTTTPAGRR ALAAEGVFEC  60
KTCSKRFPSF QALGGHRTSH TRLQARMLLQ QEQEQDQHER DAARARVHEC AVCGLEFSMG  120
QALGGHMRRH RGEPAVQATA APACGETQPE VIMPDLNYPP MMEDCGGDGQ DSPAGDRRSE  180
HPLLDLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g54500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-75HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567258.11e-136zinc finger protein ZAT11
TrEMBLI1HT801e-134I1HT80_BRADI; Uncharacterized protein
STRINGBRADI2G54500.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-23C2H2 family protein