PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g56826.2.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 612aa MW: 71287 Da PI: 9.7661

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g56826.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.9	2.2e-10	15	81	33	90
FAR1 33 fvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++C+ k++ ++ +++++++ r+gCka++++ + +d+ w++++++leHnH+l+ Bradi2g56826.2.p 15 YKCKSGPKKDVVYQTlqhivcgckGYPRKKNTSSVRCGCKAMIRLLRIEDHGWYIKECKLEHNHNLS 81 555444444444444555555555456677889********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-7	14	81	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-9	198	273	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MGSWVWHSLS RSKSYKCKSG PKKDVVYQTL QHIVCGCKGY PRKKNTSSVR CGCKAMIRLL 60 RIEDHGWYIK ECKLEHNHNL SRNNGEKMCW PSHKHIDRYT RELVRNLREN NVPLTKVCSI 120 LGTYFGSTED IPFNKRSLEN LCKQISKEEA NDDVRKTMDL FTKMRDEDPF FVYTADFDTD 180 GRIRNLIWVN GKSKMDYKCF GNAITFIRLN NHFQSIIFSG VLMRQETIES FEWIFREFTS 240 LMGGKPLVTI LTVAIERVLK NTTHRWCKWH VLKMAKERLG SVYTKYSNFK PEFHKLINYS 300 ITMEEFEAAW EELLGKYDLK EHHFLTPIYE ARHRWAKPYF SGIFCAKMTS TQRSESANHM 360 LKGYVPPGAP MHLFVKQYNK LIADRISKED SENQRTRMGV VVLKTGWPIE KHAATVYTSA 420 MLQLFSDHIF DSAAYNVIEV EVNKKYLTIH SDAARREKWS KVNYEVTISD DGCMYKCHIL 480 KRWTKDATDV LPDHLVHLQK DKGSARSQSY RHATLHVAAL ELAAIGDKNV DCYHDVLKYM 540 KDDTKKFDAK KLAFTSSIMR LGHEPLRRKW RRPSHIESPG RELGSHKRHY ICALSFSSIQ 600 HTNQFGGGSW I*

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MGSWVWHSLS RSKSYKCKSG PKKDVVYQTL QHIVCGCKGY PRKKNTSSVR CGCKAMIRLL  60
RIEDHGWYIK ECKLEHNHNL SRNNGEKMCW PSHKHIDRYT RELVRNLREN NVPLTKVCSI  120
LGTYFGSTED IPFNKRSLEN LCKQISKEEA NDDVRKTMDL FTKMRDEDPF FVYTADFDTD  180
GRIRNLIWVN GKSKMDYKCF GNAITFIRLN NHFQSIIFSG VLMRQETIES FEWIFREFTS  240
LMGGKPLVTI LTVAIERVLK NTTHRWCKWH VLKMAKERLG SVYTKYSNFK PEFHKLINYS  300
ITMEEFEAAW EELLGKYDLK EHHFLTPIYE ARHRWAKPYF SGIFCAKMTS TQRSESANHM  360
LKGYVPPGAP MHLFVKQYNK LIADRISKED SENQRTRMGV VVLKTGWPIE KHAATVYTSA  420
MLQLFSDHIF DSAAYNVIEV EVNKKYLTIH SDAARREKWS KVNYEVTISD DGCMYKCHIL  480
KRWTKDATDV LPDHLVHLQK DKGSARSQSY RHATLHVAAL ELAAIGDKNV DCYHDVLKYM  540
KDDTKKFDAK KLAFTSSIMR LGHEPLRRKW RRPSHIESPG RELGSHKRHY ICALSFSSIQ  600
HTNQFGGGSW I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g56826.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169825.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020197126.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024317341.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K2DG92	0.0	A0A2K2DG92_BRADI; Uncharacterized protein
STRING	Pavir.J04547.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-59	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi2g56826.2.p