PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g57201.1.p
Common NameBRADI_2g57201, LOC100825408
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 211aa    MW: 22460.4 Da    PI: 9.8132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g57201.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-1685135155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++ykGVr+++ +g+Wv+eIr+p   g r r +lg++ t++ Aa a++aa   l+g
  Bradi2g57201.1.p  85 CRYKGVRRRR-WGKWVSEIRVP---GSRERLWLGSYATPQAAAVAHDAAVFFLRG 135
                       78*****777.**********8...435**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-985135IPR001471AP2/ERF domain
CDDcd000182.52E-1485150No hitNo description
PROSITE profilePS5103220.33686149IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-1686137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2486150IPR001471AP2/ERF domain
SMARTSM003806.1E-2486155IPR001471AP2/ERF domain
PRINTSPR003679.7E-88798IPR001471AP2/ERF domain
PRINTSPR003679.7E-8109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQVNSSAGLT LPHPIYAAQN VRALGLSKLK LDQQPAQPQK SEIQCEVAEL KRLGIKLGRS  60
QKVAMSRVDE AARGAGNGEG GEEECRYKGV RRRRWGKWVS EIRVPGSRER LWLGSYATPQ  120
AAAVAHDAAV FFLRGGGQGA TDAAALNFPE RAAATYGMGT SAAAARLSPR SVQRVASDAG  180
MAADAQLVEA REQQRLASGE ISVDDMEILM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1268160179Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g57201.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567341.11e-151ethylene-responsive transcription factor ERF096
SwissprotQ9C9I88e-32ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0Q3KIG91e-149A0A0Q3KIG9_BRADI; Uncharacterized protein
STRINGBRADI2G57200.11e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-25ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]