PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g57380.3.p
Common NameBRADI_2g57380, LOC100833869
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 251aa    MW: 25765.1 Da    PI: 8.1095
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g57380.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.45e-4337135199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v+vi+ lq++l+ql+++
  Bradi2g57380.3.p  37 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVQVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAVISILQRNLRQLQQD 129
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       la++k 
  Bradi2g57380.3.p 130 LARAKF 135
                       *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.29436137IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4237133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MASSSASSVP APGAVITLAA AAAAANGAGG VCGTGSPCAA CKFLRRKCQP DCVFAPYFPP  60
DNPQKFVQVH RVFGASNVTK LLNELHPYQR EDAVNSLAYE ADMRLRDPVY GCVAVISILQ  120
RNLRQLQQDL ARAKFELSRY QSAAGQNGQQ AAMAEFIGSA VPNGFINVGH SAALGGFGQD  180
QQFSAVQMLS RSYAEGEPIA RLGLNGGYEF GYSAGIAGAG SVSGGLGMLG GSPFLKPGIA  240
GTDDRAGAGQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-54331487120LOB family transfactor Ramosa2.1
5ly0_B4e-54331487120LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g57380.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7955600.0AY795560.1 Triticum aestivum AS2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564815.10.0LOB domain-containing protein 6
RefseqXP_010232675.10.0LOB domain-containing protein 6
SwissprotA2WXT01e-129LBD6_ORYSI; LOB domain-containing protein 6
SwissprotQ8LQH41e-129LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBLI1HU511e-180I1HU51_BRADI; Uncharacterized protein
STRINGBRADI2G57380.11e-180(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.46e-54LBD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]