PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g57800.1.p
Common NameBRADI_2g57800
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 374aa    MW: 39638.1 Da    PI: 7.6659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g57800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11307352655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk Lq
  Bradi2g57800.1.p 307 SIAERERRTRISKRLRKLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 352
                       689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.903301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15304362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-12305356No hitNo description
Gene3DG3DSA:4.10.280.108.9E-15306362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9307352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNRLTPAHHG RAATMHPPQH HHGGLARYGS APGAFLAALA DSVVASPPPP PVVSRFFSGG  60
GETSSGLASC ESSCHTDGRL QRAYGGSGEI IHHVPQPPPH PAPQSGLLRH SSSPAGLLSR  120
LMADPHGNNG GMGNIGGYTH SQAAGNVDAM AQHRRLSSQW SFSRQQQDMI MPQISEMGMA  180
LATMPADIGE SIATGGNSSS DGAGGNAQSS SYGGGGLSRN FSMSSWDDTN SIMFSSPARS  240
SKKAKVMVDL DHADDGMVTS FSNIDSQFGV SSSSLEMPGM DDYLQLQQDS VACRVRAKRG  300
CATHPRSIAE RERRTRISKR LRKLQDLVPN MDKQTNTSDM LDIAVDYIKV LQDQIEKLKQ  360
DQGNCSCPGN QNC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g57800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564851.10.0transcription factor bHLH128
TrEMBLA0A0Q3GIV00.0A0A0Q3GIV0_BRADI; Uncharacterized protein
TrEMBLI1HUA30.0I1HUA3_BRADI; Uncharacterized protein
STRINGBRADI2G57800.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.17e-45bHLH family protein