PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g58250.3.p

Common Name

BRADI_2g58250, LOC100837477

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 275aa MW: 29711 Da PI: 8.248

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g58250.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	247	270	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+++F++++ L+ H r+ H Bradi2g58250.3.p 247 YFCNSCNRTFNSSMGLEDHSRMkH 270 78******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.365	247	274	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	249	270	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009294	Biological Process	DNA mediated transformation
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010162	Biological Process	seed dormancy process
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005618	Cellular Component	cell wall
GO:0005730	Cellular Component	nucleolus
GO:0005739	Cellular Component	mitochondrion
GO:0005774	Cellular Component	vacuolar membrane
GO:0005829	Cellular Component	cytosol
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MKENVEVFVN VGGKRIMLGT LSVDKHPQVV TDQVFDKEFE LVHSSMTSNI CFTGYQFKIV 60 KSSNSSSKEG DDSDEEVPLA IPLDSNTDDY KNNQATHGVN KLTASRPADA PCSISKAAVQ 120 ETDSLEGPEG DHKDKTAAQD PSDDNDSKGS DQDMDHTPKK MKGNKRPVET PLKTPSAKKT 180 NIASPTVGKK TGSCVGKKSA HVHVATPYPA KQAHKISEHV HVATPHPAKH ARKTPENSDK 240 SKQSASYFCN SCNRTFNSSM GLEDHSRMKH GAAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g58250.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567378.1	0.0	histone deacetylase HDT2 isoform X3
TrEMBL	A0A2K2DGL2	0.0	A0A2K2DGL2_BRADI; Uncharacterized protein
TrEMBL	A0A2K2DGL9	0.0	A0A2K2DGL9_BRADI; Uncharacterized protein
STRING	BRADI2G58250.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-11	histone deacetylase 2C

Link Out ? help Back to Top
Phytozome	Bradi2g58250.3.p
Entrez Gene	100837477