PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g59110.2.p

Common Name

BRADI_2g59110

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SBP

Protein Properties

Length: 289aa MW: 30505.5 Da PI: 8.6772

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g59110.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	45.8	1.6e-14	6	37	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 s fh l efDe krsCr+rL++hn+rrrk+q+ Bradi2g59110.2.p 6 SGFHLLVEFDEVKRSCRKRLDGHNRRRRKQQP 37 77***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	13.272	1	35	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.9E-11	6	39	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.7E-7	7	34	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MLPSGSGFHL LVEFDEVKRS CRKRLDGHNR RRRKQQPDPL GPAGLFANHH GGGTRFVSYP 60 QIFSTTTSMA PEHKWPGSIA VKTEADAFQV EQYYSSLQLN GAANAAASLF HGKERSKRFP 120 FLSDHHGDTG FQQQPFTITP SSESSSNSSS RHSNGNKMFA TNDGGPDHNC ALSLLSDSPT 180 TQAAHTMITA AAQHLGGARI HYNVGGDGGG GVSLTGLSYA SAIMGDNKGS AQAAMASSTR 240 HAGAVTTAPS VAAQLQQYHG YYQHQVNGDQ GNSADAGASM QALPFSSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g59110.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232756.1	0.0	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	3e-65	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	A0A0Q3RDJ9	0.0	A0A0Q3RDJ9_BRADI; Uncharacterized protein
STRING	BRADI2G59110.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-15	SBP family protein

Link Out ? help Back to Top
Phytozome	Bradi2g59110.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]