PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g59137.1.p
Common NameBRADI_2g59137, LOC100825189
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 837aa    MW: 94061.5 Da    PI: 6.6751
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g59137.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1158.91e-49121272116
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       ++e k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy w++kk+gkt  E+he LKv++v++l+cyYa++++n+t
  Bradi2g59137.1.p  12 QQEvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYDWRRKKNGKTFAEAHEYLKVDTVKALNCYYAQADKNST 104
                       56779**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhyle 116
                       fq+r+yw+L+ ++e+ivlvhy++
  Bradi2g59137.1.p 105 FQKRIYWMLDPAYEHIVLVHYRD 127
                       *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143770.5278134IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-5711129IPR005559CG-1 DNA-binding domain
PfamPF038596.9E-4615127IPR005559CG-1 DNA-binding domain
CDDcd001029.39E-7303389No hitNo description
SuperFamilySSF812965.2E-13304388IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.3E-6304395IPR013783Immunoglobulin-like fold
PfamPF136375.6E-9511563No hitNo description
SuperFamilySSF484031.55E-13513603IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-14513611IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.273514574IPR020683Ankyrin repeat-containing domain
CDDcd002045.95E-8514558No hitNo description
PROSITE profilePS5008811.087542574IPR002110Ankyrin repeat
SMARTSM00015190663685IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.705664693IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.27E-6667748IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0084698720IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.913699728IPR000048IQ motif, EF-hand binding site
PfamPF006120.0065701720IPR000048IQ motif, EF-hand binding site
SMARTSM000150.18721743IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322723750IPR000048IQ motif, EF-hand binding site
PfamPF006120.0081723743IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MQQQGFDIQK LQQEVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN  60
FRNDGYDWRR KKNGKTFAEA HEYLKVDTVK ALNCYYAQAD KNSTFQKRIY WMLDPAYEHI  120
VLVHYRDILE GSISVSVLND SSTSNQNGSA SRADAYGSPG LTSELIGQRL NSCSPGSGEE  180
VSSQIATINN ETTNTSQFDW LRMLEMQLSL ENKERHDVNT DEVLPNDPIP VHEIRNEELD  240
TCTNNVDIFN RLEPIEDNHA EGSHLYPNAI DVLKNSDTWL DEDQLESILQ SAPVIVNESQ  300
WFHIHEVCPE WAFCSDSTKV VIAGDFLCNP SNSSWAILFG DVKVPVENVQ EGVIRCHTPP  360
DLGAGKVRMC MVDENEKPCS EAREFEFVEK PIKSTIDGNG KSCSEAREFE FQQKPGISGD  420
GLSLLLNYVQ MLFDGHGCGL FSKFRLPLPD VQCGFQVDPS DIINRTCEKL DHETTVTCVM  480
EVMLNNKFED WLSSKSEQNS EGNYLLPKKY HGVIHTIAAL GYDWALKPLL SSGVPINYRD  540
ANGWTALHWA ARFGREQMVG VLLAAGAAAG ALSDPTSEDP VAKTPASIAT AYGFDGLSAF  600
LSEAQLTTHL HSLESKENGN PIDHTLGEGI SNAVVRISDK CAHVDGGTDD QLALQDSLGA  660
IRNAVQAAGR IQATFRVFSL KKKHKMALRE AGAASRAMLD KAAMSIQKNF RCWKKRKEFR  720
KVRKYVIKIQ ARVRAHQERK KYKELLQSVG ILEKVMLRWF RKGVGLRGFN TTAMPIDEDE  780
GEDIARVFRK ERVETAVNEA VLRVSAIVGS PLARLQYRRM LEIHQQAKHA HEKSVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g59137.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564956.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A0Q3RDK60.0A0A0Q3RDK6_BRADI; Uncharacterized protein
STRINGBRADI2G59137.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Representative plantOGRP1440644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-105Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains