PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g59137.2.p
Common NameBRADI_2g59137
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 821aa    MW: 92484.9 Da    PI: 6.7428
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g59137.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1158.99.8e-50121272116
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       ++e k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy w++kk+gkt  E+he LKv++v++l+cyYa++++n+t
  Bradi2g59137.2.p  12 QQEvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYDWRRKKNGKTFAEAHEYLKVDTVKALNCYYAQADKNST 104
                       56779**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhyle 116
                       fq+r+yw+L+ ++e+ivlvhy++
  Bradi2g59137.2.p 105 FQKRIYWMLDPAYEHIVLVHYRD 127
                       *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.4358134IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-5711129IPR005559CG-1 DNA-binding domain
PfamPF038596.7E-4615127IPR005559CG-1 DNA-binding domain
CDDcd001029.16E-7287373No hitNo description
SuperFamilySSF812965.0E-13288372IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.3E-6288379IPR013783Immunoglobulin-like fold
PfamPF136375.5E-9495547No hitNo description
Gene3DG3DSA:1.25.40.203.7E-14497595IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-13497587IPR020683Ankyrin repeat-containing domain
CDDcd002045.80E-8498542No hitNo description
PROSITE profilePS5029715.273498558IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.087526558IPR002110Ankyrin repeat
SMARTSM00015190647669IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.705648677IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.25E-6651732IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0084682704IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.913683712IPR000048IQ motif, EF-hand binding site
PfamPF006120.0064685704IPR000048IQ motif, EF-hand binding site
SMARTSM000150.18705727IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322707734IPR000048IQ motif, EF-hand binding site
PfamPF006120.0079707727IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MQQQGFDIQK LQQEVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN  60
FRNDGYDWRR KKNGKTFAEA HEYLKVDTVK ALNCYYAQAD KNSTFQKRIY WMLDPAYEHI  120
VLVHYRDILE NGSASRADAY GSPGLTSELI GQRLNSCSPG SGEEVSSQIA TINNETTNTS  180
QFDWLRMLEM QLSLENKERH DVNTDEVLPN DPIPVHEIRN EELDTCTNNV DIFNRLEPIE  240
DNHAEGSHLY PNAIDVLKNS DTWLDEDQLE SILQSAPVIV NESQWFHIHE VCPEWAFCSD  300
STKVVIAGDF LCNPSNSSWA ILFGDVKVPV ENVQEGVIRC HTPPDLGAGK VRMCMVDENE  360
KPCSEAREFE FVEKPIKSTI DGNGKSCSEA REFEFQQKPG ISGDGLSLLL NYVQMLFDGH  420
GCGLFSKFRL PLPDVQCGFQ VDPSDIINRT CEKLDHETTV TCVMEVMLNN KFEDWLSSKS  480
EQNSEGNYLL PKKYHGVIHT IAALGYDWAL KPLLSSGVPI NYRDANGWTA LHWAARFGRE  540
QMVGVLLAAG AAAGALSDPT SEDPVAKTPA SIATAYGFDG LSAFLSEAQL TTHLHSLESK  600
ENGNPIDHTL GEGISNAVVR ISDKCAHVDG GTDDQLALQD SLGAIRNAVQ AAGRIQATFR  660
VFSLKKKHKM ALREAGAASR AMLDKAAMSI QKNFRCWKKR KEFRKVRKYV IKIQARVRAH  720
QERKKYKELL QSVGILEKVM LRWFRKGVGL RGFNTTAMPI DEDEGEDIAR VFRKERVETA  780
VNEAVLRVSA IVGSPLARLQ YRRMLEIHQQ AKHAHEKSVS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g59137.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316087.10.0calmodulin-binding transcription activator 4 isoform X2
TrEMBLA0A0Q3GJH00.0A0A0Q3GJH0_BRADI; Uncharacterized protein
STRINGBRADI2G59137.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-105Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains