PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g59137.3.p
Common NameBRADI_2g59137, LOC100825189
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 810aa    MW: 90921 Da    PI: 6.8131
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g59137.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1158.99.7e-50121272116
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       ++e k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy w++kk+gkt  E+he LKv++v++l+cyYa++++n+t
  Bradi2g59137.3.p  12 QQEvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYDWRRKKNGKTFAEAHEYLKVDTVKALNCYYAQADKNST 104
                       56779**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhyle 116
                       fq+r+yw+L+ ++e+ivlvhy++
  Bradi2g59137.3.p 105 FQKRIYWMLDPAYEHIVLVHYRD 127
                       *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143770.5278134IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-5711129IPR005559CG-1 DNA-binding domain
PfamPF038596.5E-4615127IPR005559CG-1 DNA-binding domain
CDDcd001029.01E-7276362No hitNo description
SuperFamilySSF812964.8E-13277361IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.2E-6277368IPR013783Immunoglobulin-like fold
PfamPF136375.4E-9484536No hitNo description
Gene3DG3DSA:1.25.40.203.7E-14486584IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-13486576IPR020683Ankyrin repeat-containing domain
CDDcd002045.86E-8487531No hitNo description
PROSITE profilePS5029715.273487547IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.087515547IPR002110Ankyrin repeat
SMARTSM00015190636658IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.705637666IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.7E-7640721IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0084671693IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.913672701IPR000048IQ motif, EF-hand binding site
PfamPF006120.0063674693IPR000048IQ motif, EF-hand binding site
SMARTSM000150.18694716IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322696723IPR000048IQ motif, EF-hand binding site
PfamPF006120.0078696716IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MQQQGFDIQK LQQEVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN  60
FRNDGYDWRR KKNGKTFAEA HEYLKVDTVK ALNCYYAQAD KNSTFQKRIY WMLDPAYEHI  120
VLVHYRDILE GSISVSVLND SSTSNQNGSA SRADAYGSPG LTSELIGQRL NSCSPGSGEE  180
LSLENKERHD VNTDEVLPND PIPVHEIRNE ELDTCTNNVD IFNRLEPIED NHAEGSHLYP  240
NAIDVLKNSD TWLDEDQLES ILQSAPVIVN ESQWFHIHEV CPEWAFCSDS TKVVIAGDFL  300
CNPSNSSWAI LFGDVKVPVE NVQEGVIRCH TPPDLGAGKV RMCMVDENEK PCSEAREFEF  360
VEKPIKSTID GNGKSCSEAR EFEFQQKPGI SGDGLSLLLN YVQMLFDGHG CGLFSKFRLP  420
LPDVQCGFQV DPSDIINRTC EKLDHETTVT CVMEVMLNNK FEDWLSSKSE QNSEGNYLLP  480
KKYHGVIHTI AALGYDWALK PLLSSGVPIN YRDANGWTAL HWAARFGREQ MVGVLLAAGA  540
AAGALSDPTS EDPVAKTPAS IATAYGFDGL SAFLSEAQLT THLHSLESKE NGNPIDHTLG  600
EGISNAVVRI SDKCAHVDGG TDDQLALQDS LGAIRNAVQA AGRIQATFRV FSLKKKHKMA  660
LREAGAASRA MLDKAAMSIQ KNFRCWKKRK EFRKVRKYVI KIQARVRAHQ ERKKYKELLQ  720
SVGILEKVML RWFRKGVGLR GFNTTAMPID EDEGEDIARV FRKERVETAV NEAVLRVSAI  780
VGSPLARLQY RRMLEIHQQA KHAHEKSVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g59137.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232758.10.0calmodulin-binding transcription activator 4 isoform X3
TrEMBLA0A0Q3J0010.0A0A0Q3J001_BRADI; Uncharacterized protein
STRINGBRADI2G59137.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-105Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains