PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g59137.4.p
Common NameBRADI_2g59137
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 794aa    MW: 89344.4 Da    PI: 6.887
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g59137.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11599.4e-50121272116
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       ++e k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy w++kk+gkt  E+he LKv++v++l+cyYa++++n+t
  Bradi2g59137.4.p  12 QQEvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYDWRRKKNGKTFAEAHEYLKVDTVKALNCYYAQADKNST 104
                       56779**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhyle 116
                       fq+r+yw+L+ ++e+ivlvhy++
  Bradi2g59137.4.p 105 FQKRIYWMLDPAYEHIVLVHYRD 127
                       *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.4358134IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-5711129IPR005559CG-1 DNA-binding domain
PfamPF038596.3E-4615127IPR005559CG-1 DNA-binding domain
CDDcd001028.78E-7260346No hitNo description
Gene3DG3DSA:2.60.40.102.2E-6261352IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.8E-13261345IPR014756Immunoglobulin E-set
PfamPF136375.3E-9468520No hitNo description
SuperFamilySSF484031.51E-13470560IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.5E-14470568IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.273471531IPR020683Ankyrin repeat-containing domain
CDDcd002045.92E-8471515No hitNo description
PROSITE profilePS5008811.087499531IPR002110Ankyrin repeat
SMARTSM00015190620642IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.705621650IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.43E-7624705IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0084655677IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.913656685IPR000048IQ motif, EF-hand binding site
PfamPF006120.0062658677IPR000048IQ motif, EF-hand binding site
SMARTSM000150.18678700IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322680707IPR000048IQ motif, EF-hand binding site
PfamPF006120.0076680700IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MQQQGFDIQK LQQEVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN  60
FRNDGYDWRR KKNGKTFAEA HEYLKVDTVK ALNCYYAQAD KNSTFQKRIY WMLDPAYEHI  120
VLVHYRDILE NGSASRADAY GSPGLTSELI GQRLNSCSPG SGEELSLENK ERHDVNTDEV  180
LPNDPIPVHE IRNEELDTCT NNVDIFNRLE PIEDNHAEGS HLYPNAIDVL KNSDTWLDED  240
QLESILQSAP VIVNESQWFH IHEVCPEWAF CSDSTKVVIA GDFLCNPSNS SWAILFGDVK  300
VPVENVQEGV IRCHTPPDLG AGKVRMCMVD ENEKPCSEAR EFEFVEKPIK STIDGNGKSC  360
SEAREFEFQQ KPGISGDGLS LLLNYVQMLF DGHGCGLFSK FRLPLPDVQC GFQVDPSDII  420
NRTCEKLDHE TTVTCVMEVM LNNKFEDWLS SKSEQNSEGN YLLPKKYHGV IHTIAALGYD  480
WALKPLLSSG VPINYRDANG WTALHWAARF GREQMVGVLL AAGAAAGALS DPTSEDPVAK  540
TPASIATAYG FDGLSAFLSE AQLTTHLHSL ESKENGNPID HTLGEGISNA VVRISDKCAH  600
VDGGTDDQLA LQDSLGAIRN AVQAAGRIQA TFRVFSLKKK HKMALREAGA ASRAMLDKAA  660
MSIQKNFRCW KKRKEFRKVR KYVIKIQARV RAHQERKKYK ELLQSVGILE KVMLRWFRKG  720
VGLRGFNTTA MPIDEDEGED IARVFRKERV ETAVNEAVLR VSAIVGSPLA RLQYRRMLEI  780
HQQAKHAHEK SVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g59137.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316088.10.0calmodulin-binding transcription activator 4 isoform X4
TrEMBLA0A0Q3KJF60.0A0A0Q3KJF6_BRADI; Uncharacterized protein
STRINGBRADI2G59137.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-105Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains