PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g59440.2.p
Common NameBRADI_2g59440
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 316aa    MW: 34495.5 Da    PI: 5.8031
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g59440.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.5e-211391176
          trihelix  1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
                      rWt++e+l+Li+a+r +e+r  +   g+    +W+ vs ++r++g+er+p qC+++w nl+++ kki  +ekk+t++++
  Bradi2g59440.2.p 13 RWTRHETLVLIQAKRATEQRAAAaaqGQPVRLKWAVVSGYCRRHGVERGPMQCRKRWGNLSWDLKKILVWEKKNTKTKT 91
                      8*******************997222456678*****************************************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.516673IPR017877Myb-like domain
PfamPF138375.4E-91388No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAGATTPRSR LPRWTRHETL VLIQAKRATE QRAAAAAQGQ PVRLKWAVVS GYCRRHGVER  60
GPMQCRKRWG NLSWDLKKIL VWEKKNTKTK TSMEKEGEEE EEEEKKGEGQ DESSSSRPSF  120
WEMRGEQRRA RQLPSSFDRE VYDALVGAAA SVKLPPAESG EEMDLDDDED EDGGHQQIPM  180
PMPMPAQTPP PPPVLVMPIS ARMYVPPASS QHECSDPATE SAKKPGSDKN STSQQDSEAT  240
FGAGVGAEGT ATAATATTSV IGRQVTEALE RGNRVLAEQL EAQRASAESD REHRAALLAA  300
VNRLADAVSR IADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g59440.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126092e-59CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567424.30.0trihelix transcription factor ASR3
TrEMBLA0A0Q3N3R90.0A0A0Q3N3R9_BRADI; Uncharacterized protein
STRINGBRADI2G59440.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-26Trihelix family protein