PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60030.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 181aa    MW: 18783 Da    PI: 8.5104
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60030.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1291.7e-4045133795
             NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                       +lPianv+rimk +lP +ak+sk ake +qec++ef++fvt+eas++c+re+rkt+ngdd+++a+ +lG+++y++++  yl+++re+e+
  Bradi2g60030.3.p  45 LLPIANVGRIMKGALPPEAKVSKRAKEAIQECATEFVAFVTGEASQRCRRERRKTVNGDDVCHAMRSLGLDHYAAAMGRYLQRHREAEE 133
                       79************************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-3845140IPR009072Histone-fold
SuperFamilySSF471133.87E-3045137IPR009072Histone-fold
PfamPF008086.2E-2246109IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-117391No hitNo description
PRINTSPR006151.3E-1192110No hitNo description
PRINTSPR006151.3E-11111129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSDTFNLSGF TLPGPTPRIS HASTSAVGAG AGPGEEEEHQ GGGGLLPIAN VGRIMKGALP  60
PEAKVSKRAK EAIQECATEF VAFVTGEASQ RCRRERRKTV NGDDVCHAMR SLGLDHYAAA  120
MGRYLQRHRE AEELAAEING RSVGGGGVPD FGGQIDVRAQ LSVSGSRAGA GGSEKRLGRN  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-3546130892Transcription factor HapC (Eurofung)
4g92_B4e-3546130892Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60030.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315117.11e-128nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-41NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLI1HUZ21e-126I1HUZ2_BRADI; Uncharacterized protein
STRINGBRADI2G60030.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-41nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]