PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60050.1.p
Common NameLOC100833879
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 183aa    MW: 19432.6 Da    PI: 5.6855
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.96.8e-5434129297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl k+rele
  Bradi2g60050.1.p  34 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFSALGFDDYVDPMRRYLLKFRELE 126
                       89******************************************************************************************* PP

             NF-YB  95 gek 97 
                       g++
  Bradi2g60050.1.p 127 GDR 129
                       *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.6E-5127136IPR009072Histone-fold
SuperFamilySSF471139.89E-3836137IPR009072Histone-fold
PfamPF008085.7E-2739102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-176785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-1786104No hitNo description
PRINTSPR006154.5E-17105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MADYHGGGGG SPERRLLEAG GGSGEQQDQG MGIKEQDRLL PIANVGRIMK QILPPNAKIS  60
KEAKETMQEC VSEFISFVTG EASDKCHKEK RKTVNGDDVC WAFSALGFDD YVDPMRRYLL  120
KFRELEGDRA AAAASSRGAA AGFQAGADHP AASSSAAAAA AGHFMFDAMD RPDNNNSGSR  180
QF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A9e-4331124497NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-139HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567445.11e-132nuclear transcription factor Y subunit B-1
SwissprotO822488e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLI1HUZ41e-131I1HUZ4_BRADI; Uncharacterized protein
STRINGBRADI2G60050.11e-132(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]