PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60331.1.p
Common NameBRADI_2g60331, LOC100837867
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 244aa    MW: 25332.9 Da    PI: 5.0555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60331.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.6e-124597153
               AP2  1 sgykGVrwdk..krgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                      + y+GVr +     grWv+e+r+p   g + kr +lg++ tae A +a++aa+++l
  Bradi2g60331.1.p 45 PVYRGVRSRGaaAAGRWVCEVRVP---GaHGKRLWLGTHLTAESAGRAHDAAMLAL 97
                      5799996654115688*******9...7666**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-64597IPR001471AP2/ERF domain
PROSITE profilePS5103218.46546109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-2146111IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1246111IPR016177DNA-binding domain
SMARTSM003804.1E-946115IPR001471AP2/ERF domain
CDDcd000183.05E-1647111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAMDGSDRCL SSPSSSSSSH DRQEGLAVWS KRPAGRTKFK ETRHPVYRGV RSRGAAAAGR  60
WVCEVRVPGA HGKRLWLGTH LTAESAGRAH DAAMLALLPS AAACLLNFPD SAAATPPALG  120
CAAVVAVAGF LSREAAPSIV SVVIPVAVVP VAVVPVDHGA AGAWPSFLGV LFEVPLPVPP  180
MAMGSGMLEL ELELDMPSEM DLGMHYADLA EGLLMEPPPD TAEAPCWESG DYGHGDAGDL  240
WSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60331.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2583976e-53AB258397.1 Lolium perenne LpCBFIIIc mRNA for CRT-binding factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567456.11e-173dehydration-responsive element-binding protein 1H
TrEMBLI1HV241e-171I1HV24_BRADI; Uncharacterized protein
STRINGBRADI2G60331.11e-172(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.19e-14dehydration response element B1A