PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60340.1.p
Common NameBRADI_2g60340, LOC100838171
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 241aa    MW: 25109.7 Da    PI: 4.6609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-154696153
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                      + y+GVr +   grWv+e+r+p   g + kr +lg++ tae A +a++aa+++l
  Bradi2g60340.1.p 46 PVYRGVRHRGAAGRWVCEVRVP---GaHGKRLWLGTHLTAESAGRAHDAAMLAL 96
                      68*******************9...7666**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-94696IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1347110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2247110IPR001471AP2/ERF domain
PROSITE profilePS5103218.79547108IPR001471AP2/ERF domain
SMARTSM003802.0E-1147114IPR001471AP2/ERF domain
CDDcd000186.33E-1748110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAMDGFDERI CSSPSSSPSS SSSQEGLAVW SKRPAGRTKF KETRHPVYRG VRHRGAAGRW  60
VCEVRVPGAH GKRLWLGTHL TAESAGRAHD AAMLALLPSA AACLLNFPDS AAATPPALGC  120
AAVVAVAGFL SREAAPSIVS VVIPVAVVPV AVVPVDNGAA GAWPSFLGVL FEVPLPVPPM  180
AMGSGMLELE LELDMPSEMD LGMHYADLAE GLLMEPPQDT NEASCWESGD FGDGGDLWSY  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804704e-57JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232793.11e-172dehydration-responsive element-binding protein 1H
TrEMBLI1HV251e-171I1HV25_BRADI; Uncharacterized protein
STRINGBRADI2G60340.11e-172(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-20C-repeat/DRE binding factor 2