PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60554.11.p
Common NameBRADI_2g60554, LOC104582958
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 573aa    MW: 64379.2 Da    PI: 7.953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60554.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-13241031499
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + +v+p   ++++g +  +s  ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Bradi2g60554.11.p  24 HSMVIPEWVINHFGRNIVGS--IKLEAPNGNIYDVGV--TVKMNTTFLQSGWRAFVDANQIEENFCLMFRYRGTSRF--EVTIFDS 103
                        67999988887777776675..***************..99999***************************999999..9999986 PP
2B348.21.9e-15471569699
                        ..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        +ps v++s+  ++++  ae++        g   ++ + l le   ++ r+W+ +l  r++ +r+ ++kGW +F+++n+L++gD ++F++ ++
  Bradi2g60554.11.p 471 SPSPVFSSQ--YISRYLAEKYatgltgvrGR--RGAISLLLERdgRKRRTWSCQL--RRSIDRTRIAKGWPSFARDNHLQAGDLCLFEVLRN 556
                        688888887..88888898889888765422..233444444323555*******..*******************************9988 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                         ++ ++vv ++r+
  Bradi2g60554.11.p 557 eEQLKMVVYIIRR 569
                        8*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.25111104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-1513104IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-414104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-1520105IPR015300DNA-binding pseudobarrel domain
PfamPF023628.8E-1123103IPR003340B3 DNA binding domain
CDDcd100178.9E-1424102No hitNo description
Gene3DG3DSA:2.40.330.106.6E-11185278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-11187291IPR015300DNA-binding pseudobarrel domain
CDDcd100177.09E-8190291No hitNo description
PROSITE profilePS508637.063192293IPR003340B3 DNA binding domain
SMARTSM010190.059192295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-14448570IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-13448572IPR015300DNA-binding pseudobarrel domain
CDDcd100175.98E-13453568No hitNo description
SMARTSM010190.0052465570IPR003340B3 DNA binding domain
PfamPF023623.8E-13471569IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857505570IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MRNPCGCCQS KIRFIRHING NYMHSMVIPE WVINHFGRNI VGSIKLEAPN GNIYDVGVTV  60
KMNTTFLQSG WRAFVDANQI EENFCLMFRY RGTSRFEVTI FDSNGKEKVP CRDSMGSDSA  120
SQSSAGEGSD STAYSSKELP ENNPSLDDSM ESDDLQVLSK YYVLSGLCDL TEEQLTKLHA  180
LVGKIKPEIP VLVVLMKKSN VNHNFTLIIR KDYAREYFPP KNTTIILQLP GKSKHWNCKF  240
YILPSGESKA GRCDLSIGNF VRDNHVRKGD IFLLQPITKV KGHIFTVTVH PLHKASIDHS  300
PDGSTDIGLN HGCASTKMAS TASVKEEPII DESTKTALTP RVKEEPTIDG EEISFWGHAE  360
HGSSDSSEED SQPRILLNHG CASTKMALTA RVKEERTIDG EEISSSGHGE HVFSDNSNET  420
SEARFMPLDT SCLLRAQEKK MMEKIEAIKS ELPIYWKVMN KSDVCVHKRG SPSPVFSSQY  480
ISRYLAEKYA TGLTGVRGRR GAISLLLERD GRKRRTWSCQ LRRSIDRTRI AKGWPSFARD  540
NHLQAGDLCL FEVLRNEEQL KMVVYIIRRE EC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60554.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754675.10.0B3 domain-containing protein Os03g0620400 isoform X2
TrEMBLA0A0Q3GK820.0A0A0Q3GK82_BRADI; Uncharacterized protein
STRINGBRADI2G60554.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-12B3 family protein