PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60554.13.p
Common NameBRADI_2g60554, LOC104582958
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 542aa    MW: 60932.4 Da    PI: 8.6232
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60554.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.55e-13241031499
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + +v+p   ++++g +  +s  ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Bradi2g60554.13.p  24 HSMVIPEWVINHFGRNIVGS--IKLEAPNGNIYDVGV--TVKMNTTFLQSGWRAFVDANQIEENFCLMFRYRGTSRF--EVTIFDS 103
                        67999988887777776675..***************..99999***************************999999..9999986 PP
2B348.41.7e-15440538699
                        ..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        +ps v++s+  ++++  ae++        g   ++ + l le   ++ r+W+ +l  r++ +r+ ++kGW +F+++n+L++gD ++F++ ++
  Bradi2g60554.13.p 440 SPSPVFSSQ--YISRYLAEKYatgltgvrGR--RGAISLLLERdgRKRRTWSCQL--RRSIDRTRIAKGWPSFARDNHLQAGDLCLFEVLRN 525
                        688888887..88888999889888765422..233444444323555*******..*******************************9988 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                         ++ ++vv ++r+
  Bradi2g60554.13.p 526 eEQLKMVVYIIRR 538
                        8*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.25111104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-1513104IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-414104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-1520105IPR015300DNA-binding pseudobarrel domain
PfamPF023628.1E-1123103IPR003340B3 DNA binding domain
CDDcd100171.00E-1324102No hitNo description
Gene3DG3DSA:2.40.330.106.0E-11154247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-11156260IPR015300DNA-binding pseudobarrel domain
CDDcd100178.36E-8159260No hitNo description
PROSITE profilePS508637.063161262IPR003340B3 DNA binding domain
SMARTSM010190.059161264IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14417539IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-13417541IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-13422537No hitNo description
SMARTSM010190.0052434539IPR003340B3 DNA binding domain
PfamPF023623.4E-13440538IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857474539IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MRNPCGCCQS KIRFIRHING NYMHSMVIPE WVINHFGRNI VGSIKLEAPN GNIYDVGVTV  60
KMNTTFLQSG WRAFVDANQI EENFCLMFRY RGTSRFEVTI FDSNGKEKVP CRDSMGSDSA  120
SQSSAGEGSD STAYSSKELP EEQLTKLHAL VGKIKPEIPV LVVLMKKSNV NHNFTLIIRK  180
DYAREYFPPK NTTIILQLPG KSKHWNCKFY ILPSGESKAG RCDLSIGNFV RDNHVRKGDI  240
FLLQPITKVK GHIFTVTVHP LHKASIDHSP DGSTDIGLNH GCASTKMAST ASVKEEPIID  300
ESTKTALTPR VKEEPTIDGE EISFWGHAEH GSSDSSEEDS QPRILLNHGC ASTKMALTAR  360
VKEERTIDGE EISSSGHGEH VFSDNSNETS EARFMPLDTS CLLRAQEKKM MEKIEAIKSE  420
LPIYWKVMNK SDVCVHKRGS PSPVFSSQYI SRYLAEKYAT GLTGVRGRRG AISLLLERDG  480
RKRRTWSCQL RRSIDRTRIA KGWPSFARDN HLQAGDLCLF EVLRNEEQLK MVVYIIRREE  540
C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60554.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754675.10.0B3 domain-containing protein Os03g0620400 isoform X2
TrEMBLA0A2K2DH360.0A0A2K2DH36_BRADI; Uncharacterized protein
STRINGBRADI2G60554.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-10B3 family protein