PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60554.14.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 425aa    MW: 47557 Da    PI: 8.6033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60554.14.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15323421699
                        ..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        +ps v++s+  ++++  ae++        g   ++ + l le   ++ r+W+ +l  r++ +r+ ++kGW +F+++n+L++gD ++F++ ++
  Bradi2g60554.14.p 323 SPSPVFSSQ--YISRYLAEKYatgltgvrGR--RGAISLLLERdgRKRRTWSCQL--RRSIDRTRIAKGWPSFARDNHLQAGDLCLFEVLRN 408
                        688888887..88899999999888765422..233444444323555*******..*******************************9988 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                         ++ ++vv ++r+
  Bradi2g60554.14.p 409 eEQLKMVVYIIRR 421
                        8*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-560141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-660141IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-15300422IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-13300424IPR015300DNA-binding pseudobarrel domain
CDDcd100179.00E-14305420No hitNo description
SMARTSM010190.0052317422IPR003340B3 DNA binding domain
PfamPF023622.3E-13323421IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857357422IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MASPSDYECG CARDIKDAVR ESRAPAHAAG ELVFLQATTT SADSRPTSRL QAPRFPLLKI  60
IRKDYAREYF PPKNTTIILQ LPGKSKHWNC KFYILPSGES KAGRCDLSIG NFVRDNHVRK  120
GDIFLLQPIT KVKGHIFTVT VHPLHKASID HSPDGSTDIG LNHGCASTKM ASTASVKEEP  180
IIDESTKTAL TPRVKEEPTI DGEEISFWGH AEHGSSDSSE EDSQPRILLN HGCASTKMAL  240
TARVKEERTI DGEEISSSGH GEHVFSDNSN ETSEARFMPL DTSCLLRAQE KKMMEKIEAI  300
KSELPIYWKV MNKSDVCVHK RGSPSPVFSS QYISRYLAEK YATGLTGVRG RRGAISLLLE  360
RDGRKRRTWS CQLRRSIDRT RIAKGWPSFA RDNHLQAGDL CLFEVLRNEE QLKMVVYIIR  420
REEC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60554.14.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754676.10.0B3 domain-containing protein Os03g0620400 isoform X3
TrEMBLA0A2K2DH300.0A0A2K2DH30_BRADI; Uncharacterized protein
STRINGBRADI2G60554.10.0(Brachypodium distachyon)