PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60620.1.p
Common NameBRADI_2g60620, LOC100842126
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 220aa    MW: 24497.1 Da    PI: 5.714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.8e-18361636128
               NAM   6 rFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                       +F+Pt++elv ++L+++++g + +++ +  +e+d + + PwdL +++  +++ + yfF++r+++  t +r+    k g W + g++ +  s+ 
  Bradi2g60620.1.p  36 EFEPTEDELVLHFLRPQLRGFEPRVAGAvAEEADPCGCAPWDLLARHGLRRRgRGYFFAPRRRRGGTVRRSPAGGKGGSWMHRGTKGDGASAt 128
                       5*********************88877736667**********866555666356********99998888888899******9988888764 PP

               NAM  96 ..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                         +  + + ++   fy +g a + +++ Wvm ey++
  Bradi2g60620.1.p 129 elGVVVPWRRTRYCFYvRGGAAR-SSAGWVMSEYEI 163
                       43444467788899995444444.79********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.14231189IPR003441NAC domain
PfamPF023651.0E-1236163IPR003441NAC domain
SuperFamilySSF1019417.45E-2937189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEDGANLGGV LWREEDHAGA AAGEEEEEED SEEEEEFEPT EDELVLHFLR PQLRGFEPRV  60
AGAVAEEADP CGCAPWDLLA RHGLRRRGRG YFFAPRRRRG GTVRRSPAGG KGGSWMHRGT  120
KGDGASATEL GVVVPWRRTR YCFYVRGGAA RSSAGWVMSE YEITDPRCYR RVEEGEEDEY  180
WVLCHVRRSS RAAAAAAKPR ARRAHLWDDD PSRVPGLAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18498RRRGRGYFFAPRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567467.21e-154NAC domain-containing protein 45
TrEMBLI1HV581e-153I1HV58_BRADI; Uncharacterized protein
STRINGBRADI2G60620.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Representative plantOGRP1441334