PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60750.2.p
Common NameLOC100832122
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 400aa    MW: 43456.4 Da    PI: 5.9811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60750.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3366.7e-1036739476374
              GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi..sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                        ++aa++ f +++P+l+++  +aNqaIlea+ege+ vH++D++      +QW+ Ll+ La+Rpegpp++R+T+v++    +k+ l++t+  L+
  Bradi2g60750.2.p  67 ASAAARRHFLDLCPFLRLAGAAANQAILEAMEGEKIVHVVDLGGcgADATQWLELLRLLAARPEGPPHFRLTAVHE----HKDLLSQTAMVLT 155
                       56789999**********************************96335789**************************....9************ PP

              GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................................desvsles...e 223
                       k Ae+l+vpf+fn++++ rle+l++e+Lrvk+gEala++++lqlh ll                                       +    +
  Bradi2g60750.2.p 156 KEAERLDVPFQFNPVITPRLESLDVESLRVKTGEALAISCSLQLHCLLatdedaspdsssaaaekgsaaaerrsspessglL-----SPpttR 243
                       **************9999******************************************************9998655431.....223335 PP

              GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                        +++L ++++lsPkv+vvveqea+hn++ + erf+eal+yy+alfd+le++++r+s er+ vEr llg+ei+++vac ga+rrerhe++e+W 
  Bradi2g60750.2.p 244 LESFLGALWGLSPKVMVVVEQEASHNTAGLTERFVEALNYYAALFDCLEVGASRASVERARVERWLLGEEIKDIVACDGAARRERHERAERWA 336
                       678****************************************************************************************** PP

              GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +r+e+aGF  vpls++a  qa++  +  + +g++v ee+g+++l+W+dr+L+svSaWr
  Bradi2g60750.2.p 337 ARMEAAGFAGVPLSYYALLQARRAAQGLGCEGFKVREEKGTFFLCWQDRALFSVSAWR 394
                       *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.4041374IPR005202Transcription factor GRAS
PfamPF035142.3E-10067394IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MIQQQDTEGS SSSVTSSPLQ NFSAMPLHPG TAAAHTPAAA APPWMLRELR SDERGLCLIH  60
LLLNCAASAA ARRHFLDLCP FLRLAGAAAN QAILEAMEGE KIVHVVDLGG CGADATQWLE  120
LLRLLAARPE GPPHFRLTAV HEHKDLLSQT AMVLTKEAER LDVPFQFNPV ITPRLESLDV  180
ESLRVKTGEA LAISCSLQLH CLLATDEDAS PDSSSAAAEK GSAAAERRSS PESSGLLSPP  240
TTRLESFLGA LWGLSPKVMV VVEQEASHNT AGLTERFVEA LNYYAALFDC LEVGASRASV  300
ERARVERWLL GEEIKDIVAC DGAARRERHE RAERWAARME AAGFAGVPLS YYALLQARRA  360
AQGLGCEGFK VREEKGTFFL CWQDRALFSV SAWRGRRFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4375396102381Protein SCARECROW
5b3h_A3e-436939695380Protein SCARECROW
5b3h_D3e-436939695380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60750.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648261e-139AK364826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028K08.
GenBankAK3656881e-139AK365688.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036F09.
GenBankAK3722021e-139AK372202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148A03.
GenBankAK3739581e-139AK373958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565067.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-118SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K2DH450.0A0A2K2DH45_BRADI; Uncharacterized protein
STRINGBRADI2G60750.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-40scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]