PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g62510.4.p
Common NameBRADI_2g62510
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 215aa    MW: 24286 Da    PI: 6.5786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g62510.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-184084147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rgr++++E+ l v++++++G++ W++Iar m+ gRt++++k++w+++
  Bradi2g62510.4.p 40 RGRMSPDEERLVVELHAKWGNR-WSRIARSMP-GRTDNEIKNYWRTH 84
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.3911434IPR017877Myb-like domain
SuperFamilySSF466891.63E-202097IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-92047IPR009057Homeodomain-like
PROSITE profilePS5129425.4543589IPR017930Myb domain
SMARTSM007173.1E-163987IPR001005SANT/Myb domain
PfamPF002494.9E-164084IPR001005SANT/Myb domain
CDDcd001671.17E-114284No hitNo description
Gene3DG3DSA:1.10.10.603.9E-194886IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MHLCCAAVLY FATSEYAGLN RSGKSCRLRW VNYLHPDLKR GRMSPDEERL VVELHAKWGN  60
RWSRIARSMP GRTDNEIKNY WRTHTRKLKH KHRHHQEEEE STKVATSASA STSTSAATTS  120
PSSTSSSSDV EVVQEAASKE DEQQQLLCAG TMDDGQLLWN DDGIDAYASW SGATSSMMMV  180
PSSPVWPWDD HYCCPTDSLW GHDEVFEYKK MLHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-16218740106B-MYB
1gv2_A3e-16218737103MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-16218737103C-Myb DNA-Binding Domain
1msf_C4e-16218737103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g62510.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519397e-71JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds.
GenBankJN1913477e-71JN191347.1 Triticum aestivum MYB13-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314946.11e-160transcription factor MYB48 isoform X1
TrEMBLA0A0Q3J1I01e-158A0A0Q3J1I0_BRADI; Uncharacterized protein
STRINGBRADI2G62510.11e-145(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-37myb domain protein 59