PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g62660.1.p
Common NameBRADI_2g62660, LOC100846492
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 157aa    MW: 17140.7 Da    PI: 9.974
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g62660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-192357135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  Bradi2g62660.1.p 23 CTDCNTTKTPLWRGGPTGPKSLCNACGIRYRKRRR 57
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-181772IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-161758IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.2571753IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-131757No hitNo description
CDDcd002025.03E-152258No hitNo description
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
PfamPF003202.1E-172357IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEPDMVVVAD PDECTASGEP KACTDCNTTK TPLWRGGPTG PKSLCNACGI RYRKRRRQAM  60
GLDPEVKKKP KKEDAAAANT NTKAASAGAA DQEGKDKDKE KKEPRTHTVE LHMVGFAKDV  120
VLKQRRRMRR RKPSCQGEEE RAAILLMALS SGVIYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256RKRRR
2123129QRRRMRR
3124131RRRMRRRK
4125130RRMRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g62660.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988583e-57FP098858.1 Phyllostachys edulis cDNA clone: bphylf052j14, full insert sequence.
GenBankFP1000033e-57FP100003.1 Phyllostachys edulis cDNA clone: bphyst005b14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565196.11e-112GATA transcription factor 16
TrEMBLI1HVV11e-110I1HVV1_BRADI; Uncharacterized protein
STRINGBRADI2G62660.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-19GATA transcription factor 15