PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g00300.1.p
Common NameBRADI_3g00300, LOC100834723
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 191aa    MW: 20703.2 Da    PI: 8.9604
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g00300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.11.9e-13118167554
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                       +r+rr++kNRe+A rsR+RK+a++ eLe + ++L   N++L k+ + l+ 
  Bradi3g00300.1.p 118 RRQRRMIKNRESAARSRARKQAYTNELELELAQLRRDNQMLLKRHQDLNA 167
                       69****************************************99888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-9114178IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.519116169IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-13118170No hitNo description
SuperFamilySSF579591.38E-10118169No hitNo description
PfamPF001701.0E-11118168IPR004827Basic-leucine zipper domain
CDDcd147073.44E-21118170No hitNo description
PROSITE patternPS000360121136IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEEEVIWKDM SSLSSTPVAG LQQHYYLSSP ARSCFHRPPP PTALALSSTL EFTYLGCAAA  60
TASNSSSGDD AQLMPPAADL DDILISFAAA SNNHTGAGSA NNNKRSTSAI TAGGGCERRQ  120
RRMIKNRESA ARSRARKQAY TNELELELAQ LRRDNQMLLK RHQDLNARLA MEAQVPDRST  180
LQRCRSAPAP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g00300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3758362e-33AK375836.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107H21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573205.11e-138protein FD
TrEMBLI1HVY41e-137I1HVY4_BRADI; Uncharacterized protein
STRINGBRADI3G00300.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146021020
Representative plantOGRP1780122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.11e-22bZIP family protein