PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g01540.1.p
Common NameBRADI_3g01540, LOC100840541
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 247aa    MW: 26346.7 Da    PI: 5.0502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g01540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-0966127454
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RR+++N++f eL +++ + +             ++ Kl+Ka iL  A + + +L
  Bradi3g01540.1.p  66 SKACREKMRREKLNDRFLELCSVMNPgNQgclevcsasnPSKQAKLDKANILSDAARMLAQL 127
                       6789**********************777*********999999************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1155143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.52862127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-565132No hitNo description
PfamPF000107.0E-766127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1167149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-668133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MMDGGGDPVE EFLVGGAGGG DDGEDLAVFC DGGLGIEDVS GDACGLEQSN SGKRGRDEPS  60
SSGPKSKACR EKMRREKLND RFLELCSVMN PGNQGCLEVC SASNPSKQAK LDKANILSDA  120
ARMLAQLRGE AEKLKQSNES LRETIKDLKV EKNELRDEKA SLKAEKDRLE QQVKATSVAP  180
TGFVPHLPHP AAFHPAAFPP FAPPYQAPTD KGAPIPAAFP GMAMWHWLPP TAVDTTQDPK  240
LWPPNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g01540.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573308.10.0transcription factor ILR3
TrEMBLI1HWD41e-180I1HWD4_BRADI; Uncharacterized protein
STRINGBRADI3G01540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Representative plantOGRP7551766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-52bHLH family protein