PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g04410.1.p
Common NameBRADI_3g04410, LOC100837711
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 194aa    MW: 19751 Da    PI: 7.186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g04410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-182272256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr+++ +gr++AeIrdps+   ++ ++lg+f+++++Aa a++aa+++l+g+
  Bradi3g04410.1.p 22 KYRGVRRRP-SGRYAAEIRDPSK---KTPIWLGTFDSPQDAALAYDAAARNLRGA 72
                      8********.7*********964...6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.8372279IPR001471AP2/ERF domain
PfamPF008471.8E-112271IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-202279IPR016177DNA-binding domain
SMARTSM003803.2E-322285IPR001471AP2/ERF domain
CDDcd000182.08E-162278No hitNo description
Gene3DG3DSA:3.30.730.109.5E-292280IPR001471AP2/ERF domain
PRINTSPR003671.3E-92334IPR001471AP2/ERF domain
PRINTSPR003671.3E-96181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRRARPGPPP PAPPGPGKEE VKYRGVRRRP SGRYAAEIRD PSKKTPIWLG TFDSPQDAAL  60
AYDAAARNLR GAAARTNFPS PSSATPPLPP PAPATVAAAA TSSHSSTVET WSGGGGVTGF  120
PVPSAAIGAA PAVEEDSRSY CGSSSSALCE EGASASASAA PSPPQLPFDL NLPYPASAAD  180
EMDWSCPDTL LRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191583776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g04410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575044.11e-132ethylene-responsive transcription factor 3
TrEMBLI1HXE41e-131I1HXE4_BRADI; Uncharacterized protein
STRINGBRADI3G04410.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.19e-15ERF domain protein 12