PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g04920.2.p
Common NameBRADI_3g04920, LOC100829021
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 914aa    MW: 101273 Da    PI: 5.8745
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g04920.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-24132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   +
  Bradi3g04920.2.p 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--W 220
                       99*****************************86555544..8************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Bradi3g04920.2.p 221 NDNNQLLLGIRRA 233
                       777778***9997 PP
2Auxin_resp120.61.2e-39258341183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Bradi3g04920.2.p 258 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 341
                       79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-42124247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-20131232No hitNo description
PfamPF023623.1E-22132233IPR003340B3 DNA binding domain
SMARTSM010191.2E-24132234IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971132234IPR003340B3 DNA binding domain
PfamPF065071.5E-34258341IPR010525Auxin response factor
SuperFamilySSF542772.88E-8772857No hitNo description
PfamPF023097.0E-8778867IPR033389AUX/IAA domain
PROSITE profilePS5174524.692781865IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MKLSPSAGGG LPDQPGSPEE EHKCLNSELW HACAGPLVSL PAVGSRVLYF PQGHSEQVSA  60
STNKEIESQI PNYPNLPPQL ICQLHNVIMH ADAETDEVCA QMTLQPLSPQ ELKDPFLPAE  120
LGTANKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFTQQPPAQ ELMAKDLHGN  180
EWKFRHIFRG QPKRHLLTTG WSVFISAKRL VAGDSVLFIW NDNNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AASTNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRISVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPA RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTIPMY SSPFPMRLKR PWPTGLPSLY GGKEDDLTSS LMWLRDGANP GFQSFNFGGL  420
GMNPWMQPRL DTSLLGLQPD MYQAISAAAL QNPAKQVSPA VLQFQQPQNI AGRSLVSSQI  480
LQQVQPQFQQ MHHQNINDNT IQGHNQSEYL QQQLQRCQSF NGQKPQEQQQ QESHQQQQSQ  540
HQHMQEQNHS PNFQSVPNAL SVFSQLSPST QSPPSIMQTV SAFSQQQNFQ DTDINSLSPL  600
NISSMHDVLR PFPSEAGSNL QDVPRTTPVP VSDPWSSKRV VMESVIPSRS HVTVSHIEQL  660
DSAPSNIPQS SSLAPLPGRE SVVDQDENSD HQNHLLFGVN IDSQSLLMQD DIPGLQNEND  720
CIASLQDDNG SNTIPYSTCN FLSPSQNNFP LNEALTSSGC LDGSGYVPFS ENPDQVNRPP  780
ATFVKVYKSG AVGRLLDITR FSSYHELRSE LGHLFGLEGQ LEDPVRSGWQ LVFVDRENDV  840
LLVGDDPWQE FVNSVSCIKI LSPQEVQQMG KQGIELLSSA PARRLGNGCD NYVSRQESRN  900
LSTGIAAVGS VEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581136240388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g04920.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575362.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2K2CVA10.0A0A2K2CVA1_BRADI; Auxin response factor
STRINGBRADI3G04920.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]