PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g05510.2.p

Common Name

BRADI_3g05510, LOC100823377

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SBP

Protein Properties

Length: 234aa MW: 25832.2 Da PI: 10.2408

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g05510.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127	7.6e-40	60	137	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l ak+yhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ Bradi3g05510.2.p 60 RCQVEGCGVELRAAKDYHRKHRVCEAHTKCPRVVVAGQERRFCQQCSRFHALSEFDEKKRSCRRRLSDHNARRRKQQP 137 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-33	53	122	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.855	58	135	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-38	59	140	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-30	61	135	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEWTAPKPAT SPPTHLLWDW GDSAAPGSSG DAAGRRGKEK RAKGEEGGGG GGGGGGAVVR 60 CQVEGCGVEL RAAKDYHRKH RVCEAHTKCP RVVVAGQERR FCQQCSRFHA LSEFDEKKRS 120 CRRRLSDHNA RRRKQQPDAF SFAPARLPST LIFDDRRQIS FVWNKGPPSH VRPFACSPWE 180 SPSEFKLSQV KNTRGVSTNG QVHLDKSHLS NAVPTLSHDM DELFPVKEIL LLK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-27	51	134	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	133	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g05510.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570368.1	1e-168	squamosa promoter-binding-like protein 4
Swissprot	Q6H509	2e-90	SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBL	A0A2K2CVF2	1e-171	A0A2K2CVF2_BRADI; Uncharacterized protein
STRING	BRADI3G05510.1	1e-168	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	1e-43	squamosa promoter binding protein-like 10

Link Out ? help Back to Top
Phytozome	Bradi3g05510.2.p
Entrez Gene	100823377

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]