PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g06562.1.p
Common NameBRADI_3g06562, LOC100839826
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 203aa    MW: 21273.1 Da    PI: 6.2488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g06562.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-192069255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  Bradi3g06562.1.p 20 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 69
                      69*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.40E-191977No hitNo description
PfamPF008477.0E-132069IPR001471AP2/ERF domain
PROSITE profilePS5103223.4062077IPR001471AP2/ERF domain
SMARTSM003808.1E-372083IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-222078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-312077IPR001471AP2/ERF domain
PRINTSPR003673.0E-102132IPR001471AP2/ERF domain
PRINTSPR003673.0E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRRGGAAAMA AQGDGDAEAR FRGVRKRPWG RYAAEIRDPA KKARVWLGTF DSAEDAARAY  60
DAAARMLRGP KARTNFPLCL AHHGQLPASY PPYPLAAAAV QPPVAVAAAW PASSSLSSTV  120
ESFGVPRARP VLPPRPPPPP ILDGDCHSDC GSSASVVDDD CVDAAASPSC QLLLPFDLNL  180
PPGCDGFACD DDDELRLTAL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-212178664ATERF1
3gcc_A4e-212178664ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g06562.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233948.11e-141ethylene-responsive transcription factor 3
TrEMBLA0A0Q3I0341e-139A0A0Q3I034_BRADI; Uncharacterized protein
STRINGBRADI3G06562.11e-134(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-21ethylene responsive element binding factor 3