PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g06670.1.p
Common NameBRADI_3g06670, LOC100843779
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 167aa    MW: 18130.2 Da    PI: 9.6509
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g06670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62e-1163111553
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                       ++ rr+++NRe+ArrsR RK+ +++eL+ +++ L a N++L  el++  
  Bradi3g06670.1.p  63 RKKRRLASNRESARRSRVRKQRRLDELASRAARLRAANRRLLVELNRVA 111
                       6889*****************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-1059123IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-860115No hitNo description
PROSITE profilePS5021710.87561124IPR004827Basic-leucine zipper domain
PfamPF001702.3E-863111IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-863113No hitNo description
PROSITE patternPS0003606681IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQRQGAACGI AAYHHSGVFL PRQDYDDPLA DVFASLSDMI APPPYGFNGG EGVGSAAPGG  60
DERKKRRLAS NRESARRSRV RKQRRLDELA SRAARLRAAN RRLLVELNRV AAEHGRVARE  120
SARLREEASE LRKKLDEMGM DSMEETQSAA SASASAGSAE AEHLQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581RRSRVRK
27582RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g06670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658602e-76AK365860.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038F22.
GenBankAK3721472e-76AK372147.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571050.11e-114ocs element-binding factor 1
TrEMBLI1HY691e-113I1HY69_BRADI; Uncharacterized protein
STRINGBRADI3G06670.11e-114(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735