PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g06950.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 549aa    MW: 57812.7 Da    PI: 9.3566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g06950.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.8e-08347370225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       kt+lCr++     Ck Gd+C+FaH
  Bradi3g06950.3.p 347 KTRLCRNYNTAEGCKWGDKCHFAH 370
                       8*********************** PP
2zf-CCCH32.11.9e-10514539127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC +far G C y d+C+FaHg+
  Bradi3g06950.3.p 514 FKTKLCENFAR-GLCTYNDKCRFAHGE 539
                       69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-5118146IPR000571Zinc finger, CCCH-type
SMARTSM003560.65119146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-6119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.676119147IPR000571Zinc finger, CCCH-type
PfamPF146081.4128144No hitNo description
SMARTSM003566.5279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976279307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5280306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-12344375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-7344376IPR000571Zinc finger, CCCH-type
SMARTSM003560.053345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666345373IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5347370IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.42E-11410490IPR004088K Homology domain, type 1
SMARTSM003221.0E-9415485IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.2E-11416484IPR004088K Homology domain, type 1
PROSITE profilePS5008413.104416480IPR004088K Homology domain, type 1
CDDcd001052.43E-10418484No hitNo description
PfamPF000138.3E-8418481IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.4E-14511544IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8512543IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-8513539IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314513540IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8514539IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSSSGPRDAA TSFVTRVVSA RDQEGNGGGA RMRMRIKYSR DFLLAVGGSE ACRRGKPLPA  60
DMRASVLIMA GMQLWSMDPT AATTTDQLQG ERTTEGGDGT AAGSSVGAPE PDALQIGMRS  120
KSKPCTEFFS TAGCRSGENC LFIHNITADY QTVADVRVLG SPTAPEHPPG SIPTGPPVPD  180
GLPTPTVKAP PCNSAHNEKE LDKPRSMDKS TPPLIDEKPT GHYAPQPMRN PAMAGFDASA  240
TAKISVDAAV TDAIIGRGRD NVKLISLGRG SRSFQTGVGS KSKPCITFFS TIGCPFGEGC  300
HFLHHFPGGY QAIVNMSILG GPTFAHPPGI MPMRPAVPNG PSTSTVKTRL CRNYNTAEGC  360
KWGDKCHFAH AERELGKHTF MDSSVPPHMG PRPTSHFAPP AMPNPGMFTP ASFGASATAK  420
ISVDAFLAGA IIGRGGMNTK LISQITGAKL AIRDHESDAS VKNIELRGTF DQIKNAGTKV  480
RELIVSFGVN NAPPPGRNSA GGSHLIGGVP RSSFKTKLCE NFARGLCTYN DKCRFAHGEN  540
ELRKSAAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g06950.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233968.20.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-133C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2K2CVN10.0A0A2K2CVN1_BRADI; Uncharacterized protein
STRINGBRADI3G06950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-53C3H family protein