PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g06957.3.p
Common NameLOC100823174
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 230aa    MW: 24644.8 Da    PI: 9.5746
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g06957.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-10187212127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC +far G C yGd+C+ aH++
  Bradi3g06957.3.p 187 FKTKLCGHFAR-GSCTYGDNCRSAHSM 212
                       69*********.*************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.319836IPR000571Zinc finger, CCCH-type
SMARTSM0035611935IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.75E-15104177IPR004088K Homology domain, type 1
SMARTSM003226.4E-13108178IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.1E-17108177IPR004088K Homology domain, type 1
PROSITE profilePS5008416.332109173IPR004088K Homology domain, type 1
CDDcd001051.42E-16111174No hitNo description
PfamPF000134.0E-15111175IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.9E-13184218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-7185217IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6186212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3186213IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8187211IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
PESSQTGARS KWPCTRFFST AGCCFGENCR FIHYFPGSYQ APADPPRSIS WGPAVPDDSL  60
TQTAERKLGK YMSKDNSVPL LREQRPTDHC TPQQAPIHGT VSAASFGASA TAKISVAASL  120
AGAIIGRGGV NIKQISRDSG AKVRIQHHES DSKLKNVELQ GTFDQIKKAS TMVMELIGIG  180
SETASNFKTK LCGHFARGSC TYGDNCRSAH SMSELRKPAI APRDRPGGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g06957.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755911.11e-170zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R03e-69C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2K2CVN21e-170A0A2K2CVN2_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI3G06957.11e-169(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2513945
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-55C3H family protein