PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g07031.1.p
Common NameBRADI_3g07031, LOC100839004
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 465aa    MW: 50381.8 Da    PI: 8.3987
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g07031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.16e-11154184434
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                        k  rr+++NReAAr+sR+RKka+i++Le+ 
  Bradi3g07031.1.p 154 AKTLRRLAQNREAARKSRLRKKAYIQNLETS 184
                       6889************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-4151207IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.3E-8152197No hitNo description
PROSITE profilePS502178.714153197IPR004827Basic-leucine zipper domain
PfamPF001702.3E-8154195IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.7E-7155192No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
PfamPF141442.9E-26236321IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGDRPWQQPH EQLAASCSAH TGMIQASSAA AATSSIHGNI IRKDPGGGYD DMAELDQALF  60
LYLNSQDQTS VQEQPQTLNI FPSRPMHVVV EPSPRAAANP PPNVAAGSSK QQPSRPAAPA  120
PGKNGKAAVK REGSGGGGGT PSTSEQEGPR TPNAKTLRRL AQNREAARKS RLRKKAYIQN  180
LETSRIRLSQ MEQEMQRCSA QGAILGGGAG IGGLSPEAAW FDGEHARWVE EHERMMRHLR  240
AAVELDDNNL QHQQGHQDDG GQLRQLVDAA AAHHVVLAEL KSAVARADVF HLVSGTWLPA  300
AERCFLWIGG SRPSDLVKVV LRHVEPLTEQ QVASVCDVQR WVREREEALD QELQAARLSL  360
SDVVCSDALL SPYPDMAAYM AHMSLAIANL SSLEAFVRQA DTLRLQMLHR LPQILTARQA  420
ARCFLAIADY SQRLRALSSL WLARPRQGQG GQPTPPGAGG RIHP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g07031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689311e-119AK368931.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571241.10.0transcription factor TGAL9 isoform X1
SwissprotQ52MZ21e-140TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A0Q3I0B40.0A0A0Q3I0B4_BRADI; Uncharacterized protein
STRINGOPUNC02G06400.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Representative plantOGRP1445244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.37e-87bZIP family protein