PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08570.2.p
Common NameBRADI_3g08570
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 474aa    MW: 50596.6 Da    PI: 8.3048
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08570.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084014381954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe+   +yp+ +e+  LA++ gLt +qV +WF N R +
  Bradi3g08570.2.p 401 FENfiRPYPQDSEKDMLAERSGLTRTQVANWFINARVR 438
                       6655689*****************************87 PP
2BELL31.83.5e-112743391172
              BELL  11 kLlslleeVdkrYkqyveqlqtvissFeava....glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        Ll +l+ +d++Y+q+ +++q+  + F+  a    g+g   + + +A +a+S  +r+L+ +i++ i
  Bradi3g08570.2.p 274 ELLRMLQLMDEKYNQCLDEIQATTAKFNSLAqpgiGIGIGGICAPFAHRAVSATYRALRRRITGEI 339
                       69**************************9975655888999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0069210337IPR006563POX domain
PfamPF075264.8E-17215336IPR006563POX domain
PROSITE profilePS5007112.098379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-23381453IPR009057Homeodomain-like
SMARTSM003891.4E-8382446IPR001356Homeobox domain
SuperFamilySSF466894.71E-15382450IPR009057Homeodomain-like
CDDcd000861.39E-11382442No hitNo description
PfamPF059206.6E-15399438IPR008422Homeobox KN domain
PROSITE patternPS000270417440IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGSTSNPSFS PFGAEAMNGY FMASTGAQGM PLPPPDHGGY GGGGLCFGDA ADIGAQFSAN  60
NMLFASLASQ LFAPPQPHGG GHGHVGARTP PPEVEEMDGE FEASGGDYCH LDAQAMAICS  120
SSSSKKPRCD DWSSAEGSRA VSVYGPPPQT AGFYYYPPAT PRELSLSLRS VSSSDSMSMA  180
SGGDQFSSGS GLTHTRSHSQ QGQAARFRPV HFAVVVARSP YAPVAQQLLN DAVGRLLHGV  240
AAASSCSASS SVVSSNNNHH GARWGHGAHG VRGELLRMLQ LMDEKYNQCL DEIQATTAKF  300
NSLAQPGIGI GIGGICAPFA HRAVSATYRA LRRRITGEIM AAAAGGSRPR SQRAESSGSW  360
ESAFIQKHLA AQQARRREQH SWRPQRGLPE KSVAVLKSWL FENFIRPYPQ DSEKDMLAER  420
SGLTRTQVAN WFINARVRLW RPLIEELHEE LRRSSAAAPA MPMEHAVSQY VLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g08570.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236337.20.0homeobox protein ATH1
RefseqXP_024316333.10.0homeobox protein ATH1
RefseqXP_024316334.10.0homeobox protein ATH1
RefseqXP_024316335.10.0homeobox protein ATH1
TrEMBLA0A0Q3F7D70.0A0A0Q3F7D7_BRADI; Uncharacterized protein
STRINGBRADI3G08570.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.19e-50homeobox gene 1