PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08790.1.p
Common NameBRADI_3g08790, LOC100826141
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 250aa    MW: 26421.5 Da    PI: 5.7714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-184592152
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Bradi3g08790.1.p 45 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 92
                      57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-124592IPR001471AP2/ERF domain
CDDcd000181.54E-2045105No hitNo description
SuperFamilySSF541712.42E-2146104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3146104IPR001471AP2/ERF domain
SMARTSM003806.1E-3546109IPR001471AP2/ERF domain
PROSITE profilePS5103223.03746103IPR001471AP2/ERF domain
PRINTSPR003673.4E-104758IPR001471AP2/ERF domain
PRINTSPR003673.4E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPEQDVCSPA SSGGSGTTSS SPPASPGFGS NRRARDDGVG GGRHPSYRGV RMRAWGKWVS  60
EIREPRKKSR IWLGTFPTPE MAARAHDAAA LVVKGPAAVL NFPDLASRLP RPASSSPRDV  120
QAAAVRAAAM DMGHLHHQQQ PAAAALSPSS PAPAMMLQQP VISAAADVVD DLDAIFELPR  180
LDDDATGHVF GGLTMADHHQ QSWCDPVWMD DDGCSYAQED MFGFGLDAAV DQYHGWGAPS  240
SVSALLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1841103972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g08790.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234077.21e-180ethylene-responsive transcription factor ERF039
TrEMBLI1HZ031e-179I1HZ03_BRADI; Uncharacterized protein
STRINGBRADI3G08790.11e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-26ERF family protein