PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08810.1.p
Common NameBRADI_3g08810, LOC104583978
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 202aa    MW: 20978.5 Da    PI: 11.1205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000122749628
                      HHHHHHHHHHHHHHHHHHHCTSC CS
               HLH  6 nerErrRRdriNsafeeLrellP 28
                      + +Er RR+++N  +++L  l+ 
  Bradi3g08810.1.p 27 KTVERVRRNQMNALYSRLDNLVR 49
                      679***************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-62794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.47E-62795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEMPPPPPPP PRRPAATGPA GGKPDRKTVE RVRRNQMNAL YSRLDNLVRA GGGAAPSPAP  60
AATRPDRLGE AAAYITQTAE RVERLKERKR ELTAARATTT EAGSGSGSGS GSSQQLEVQV  120
QHLGSGLHAI LATGGPPSDG ASFHRAVRAV EEAGGDVQNA HFSVVAARAV YTIHALVGEQ  180
PGSIERVVQR LKEAVRGHGG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g08810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236341.11e-140transcription factor bHLH162
TrEMBLI1HZ051e-138I1HZ05_BRADI; Uncharacterized protein
STRINGBRADI3G08810.11e-139(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Representative plantOGRP1445944