PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g09155.1.p

Common Name

BRADI_3g09155

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 300aa MW: 34018.8 Da PI: 9.1698

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g09155.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.7e-07	51	109	5	46
-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 ++ Edellv a ++ Wk Ia++ + + +++ qck++w k Bradi3g09155.1.p 51 SKKEDELLVSAWMNNSNDpidgnskksdhFWKQIAKEYNmyapqdQQKSAAQCKNHWTK 109 578****************************************99********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-5	51	109	IPR009057	Homeodomain-like
Pfam	PF14303	1.7E-7	147	282	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAFFGVAGGS GSRDEDNSPV GGPGTPHSAA HRVEDPANNE EGCESSPDEQ SKKEDELLVS 60 AWMNNSNDPI DGNSKKSDHF WKQIAKEYNM YAPQDQQKSA AQCKNHWTKN TTNVSKFNAC 120 YNELKSRYAS GQSEDQLMEK VREKYKWKMV KKQPKWRRLY TLEEMNKRNK LDATGAYSSS 180 NQETEAEEET KRPQGQNAAK AQRKGKSKCS RRTLSNENVE QFNNLQVRKS ITAKKMATVA 240 LLYAENKKEG IEVEKEKTKV AKLDKYFNLI EKGTSNFTDD EKPRHERLVA YLAKELGLD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g09155.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024316450.1	0.0	glutathione S-transferase T3-like
TrEMBL	A0A2K2CW56	0.0	A0A2K2CW56_BRADI; Uncharacterized protein
STRING	BRADI3G03310.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP449	6	10
Representative plant	OGRP9257	2	2

Link Out ? help Back to Top
Phytozome	Bradi3g09155.1.p