PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g09340.1.p
Common NameBRADI_3g09340, LOC100828100
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 244aa    MW: 26062.2 Da    PI: 5.6978
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g09340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-10116160549
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                       kr +r   NR +A+rsR RK+++i eLe+ v  L+ e +aL  ++
  Bradi3g09340.1.p 116 KRVKRILANRQSAQRSRVRKLQYISELERSVTGLQMEVSALSPRV 160
                       8999******************************99999887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-11112176IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.461114170IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-12116170No hitNo description
PfamPF001702.8E-9116164IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11116170No hitNo description
CDDcd147033.09E-20117167No hitNo description
PROSITE patternPS000360119134IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAQLPPRAPS AAGQQDWSAA GEFLGFAASR RGAHRRSASD SAAFLEAVPM DDDVIGGGEF  60
DRLDDEQLMS MFSDVDAPAV SSDGGGGGFM DMGDGEEGSA GARAMAAAEG GYGDPKRVKR  120
ILANRQSAQR SRVRKLQYIS ELERSVTGLQ MEVSALSPRV AFLDHQRSLL TVGNSHLRQR  180
IAALAQDKIF KDAHQEALKE EIERLRQVYH QQQIKATGGA DIATAASMQA KQELLACEGA  240
AMR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g09340.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By white light. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962471e-141FP096247.1 Phyllostachys edulis cDNA clone: bphyst038a13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572005.11e-175basic leucine zipper 19
SwissprotQ6K3R91e-107BZP19_ORYSJ; Basic leucine zipper 19
TrEMBLI1HZ751e-173I1HZ75_BRADI; Uncharacterized protein
STRINGBRADI3G09340.11e-174(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-56bZIP family protein