PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10190.1.p
Common NameBRADI_3g10190, LOC100845699
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 488aa    MW: 53325.2 Da    PI: 8.4219
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.31.5e-1366105242
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                       ++k+CnCk+s+Clk+YCeCfaa++ C+  C+C++C N++e+
  Bradi3g10190.1.p  66 KRKHCNCKNSRCLKLYCECFAARVSCDG-CNCSNCGNNSEN 105
                       789*************************.********9975 PP
2TCR50.73.6e-16150189140
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C dCkN e
  Bradi3g10190.1.p 150 KHNKGCHCKKSGCLKKYCECFQANILCSKNCRCMDCKNFE 189
                       589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.9E-1565105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.09266190IPR005172CRC domain
PfamPF036382.7E-1068102IPR005172CRC domain
SMARTSM011147.1E-19150191IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12153188IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEQEKQPPPP PNHQPKPVVP AAAGGMKAPV VAPQQQKPAA PVPRPWPVAF TPMKPAAEVK  60
NVTPKKRKHC NCKNSRCLKL YCECFAARVS CDGCNCSNCG NNSENEKIRK GAIEATLLRN  120
PLAFQPKIEN GPSTVNVRKD NSGAVPLRPK HNKGCHCKKS GCLKKYCECF QANILCSKNC  180
RCMDCKNFEG SEERRALVQG DNTSDRNNIQ QAANTALNGA IGSSGYKCSP ARRKISQEDS  240
LSEMQFQQVN LSDVSQLTPS CTGFGGHNGC YSQSNSSKMI YRSPLANTIH LSDVNDLVKH  300
VVIACRKAAE AFPTIADNKG VEVEVEKEFH ANYGLNNNRS KVQDLKEASP MDIHSKACTD  360
QHNVDPRPAS PGTQALMCDE QDTSFGNDIY RSSFAATSCD KNISEINALQ ENLVLTGFRD  420
YLRVLITRGK INEAKSSSEA AMELNAQRYH GATPVFHPVK AEENYISSNG PETLRNTGMP  480
VPNDEQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-26571991132Protein lin-54 homolog
5fd3_B4e-26571991132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571196.10.0protein tesmin/TSO1-like CXC 5
TrEMBLI1HZH60.0I1HZH6_BRADI; Uncharacterized protein
STRINGBRADI3G10190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-86Tesmin/TSO1-like CXC domain-containing protein