PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10450.5.p
Common NameBRADI_3g10450, LOC100824807
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 789aa    MW: 90707.6 Da    PI: 7.7175
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10450.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.4e-21180261291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fYn+YA  +GF+ ++ +++++      +k +  C+++gk++++++  +k+r+t+++++t+C+ak+ vk++ +g+we t++++eHnH+l+p
  Bradi3g10450.5.p 180 FYNTYALLTGFTAKRGSNYRR------KKFHIECNRSGKSTPTQDV-NKKRKTNSVEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHPLCP 261
                       9******************99......45779**********9988.9**********************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-19180261IPR004330FAR1 DNA binding domain
PfamPF105513.9E-26383474IPR018289MULE transposase domain
PROSITE profilePS509669.124665701IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDTELDKAGA EIAGNSKRMR GTYIVAGDEG SHVPKLHRKK ASKNMKTTTS ASELSKGSVA  60
GQSIIEGRLQ PAGDNYQELS SDSIEKNTEG LLADELDKQT NSVDHSLQQA GEQNHLHDNV  120
ESNEMLRNNT SNESDSDSSS GSDSESELGK YFYPKFEQLE TARKPESGMK FQTLEDAHGF  180
YNTYALLTGF TAKRGSNYRR KKFHIECNRS GKSTPTQDVN KKRKTNSVEK TNCQAKVIVK  240
LTKGQWEFTT VRNEHNHPLC PNPSLTNFFL SHKHMQNEEK LFLKVLQQSR IPPNKVMKIF  300
RRMRSSFGNI TFKNKDVTDL QYTEQKRSEN SDVESALKHL KELELQNPWF FYAKQTDEDN  360
IVQSIFWTDV RSRMDYEIFG DFLSFDTTYT TSRNNMIFVP VVGINNQGRT LLFGCALLHD  420
GKAETFKWMF QTLLQVMGEK LPGSLITNHD EAMAKAIAEV MPQVRHRFCK WDVMGKAQEK  480
IAALMAARGN MKAELDRLVD NSLTESEFEE GWGALLNRYD ANRNDYLQLM WQSRKNWVPV  540
YFRQDFYPFV ESLGRGEVMN LLFKDYVLPK DRIEKFIDSY VEIQKKITKT DDEDRLQRGT  600
APSCFSLQPI EKHGAIIYTR QIFLKVQREL LHSTAFNVQE VQRGAVYRLV KVFNYENPEF  660
DRDYFEVLVE LGSNTFKCQC AKFTRDGILC CHIFRLFTQF GINEIPGQYI VPRWTDKFKE  720
EMTKQCQGKT LEHVNNTTRY AMLMSKMADL GKKICGDGAK CNTFMLEFDK IQEKLVSTEG  780
ENLLNNDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10450.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755491.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_024316215.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0Q3HM000.0A0A0Q3HM00_BRADI; Uncharacterized protein
STRINGBRADI3G10450.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-89FAR1-related sequence 5