PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10540.2.p
Common NameBRADI_3g10540
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 343aa    MW: 38581.9 Da    PI: 4.2597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10540.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM545.8e-17151423128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk..dkevl 93 
                       +G +F+P+dee+v  +L ++++g++l+le ++ ++d  ++ PwdL     a++++ +fF++ d+++++ k+++  +  g+W  +    ++e+ 
  Bradi3g10540.2.p  15 RGDQFEPEDEEIVELFLLPRLHGDPLPLEGIFLDADPRSAPPWDLF----ARNTSGFFFAPGDEANQR-KKPRTCVGGGTWVGQKLekKEELR 102
                       5889************************999**************6....356788*****9998754.455558899***866550055555 PP

               NAM  94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +      ++ + + k    f++g+ ++g +t Wvm ey++
  Bradi3g10540.2.p 103 LRlsggedETVVCWQKYRYNFHRGSGRTG-STGWVMLEYTI 142
                       558887655555889999*****999997.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-228159IPR003441NAC domain
PROSITE profilePS5100522.53113159IPR003441NAC domain
PfamPF023651.2E-1216142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRRGAELLAL YCCRRGDQFE PEDEEIVELF LLPRLHGDPL PLEGIFLDAD PRSAPPWDLF  60
ARNTSGFFFA PGDEANQRKK PRTCVGGGTW VGQKLEKKEE LRLRLSGGED ETVVCWQKYR  120
YNFHRGSGRT GSTGWVMLEY TIAEPSDYNS FKVCRITFTG HGQKRKRVPD SDDQLATSAP  180
SSIATGYQDH SAGAARACDQ EPFLTQQETD SWTDQQEPAF PMQQQLVDQE QQAMGHASTT  240
LPFGQESGML VHMDQESGIL EQFVSEQFTM PLQMDQETSF PVNFAGYGTA PLPVYQESSM  300
WGQFVEYGPT PLTPDQQFIS MPEQSIDFED PATQVILEWF AD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10540.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3PYD10.0A0A0Q3PYD1_BRADI; Uncharacterized protein
STRINGBRADI3G10540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP1446524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-09NAC domain containing protein 47