PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g12470.1.p
Common NameBRADI_3g12470, LOC100837899
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 654aa    MW: 70245 Da    PI: 4.4644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g12470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-52291571129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgkd+e
  Bradi3g12470.1.p  29 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDRE 120
                       579***************************.99***************4357888999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       v + +  + g+kktLvf++grapkge+t+Wvmheyrle
  Bradi3g12470.1.p 121 VRH-GPMVAGMKKTLVFHSGRAPKGERTNWVMHEYRLE 157
                       ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6026177IPR003441NAC domain
PROSITE profilePS5100558.34229177IPR003441NAC domain
PfamPF023653.3E-2831156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MTLPSSSSPS APAAAAAAAA AEPDDPTSLA PGFRFHPTDE ELVSYYLKRK VLGRPLKVDA  60
IAEVDLYKLE PWDLPARSRL RSRDSQWYFF SRLDRKHANR ARTNRATAGG YWKTTGKDRE  120
VRHGPMVAGM KKTLVFHSGR APKGERTNWV MHEYRLEGDG AAGIPQDSFV VCRIFQKAGP  180
GPQNGAQYGA PFVEEEWDAD DVGLLPLEGD ADVDAEREAP GAMEKGYLQM SDLIQDCGGQ  240
NENGGVALPV SDSSNNSNHS EVAEGNSGDI LNDPNLGSNF LQHVDPGEQN SLMLNGNMLS  300
NANGGDLLNS SSPSNAFMEL KDLGYPLGND SGGSDWRTPH SFEHVNGANN EAPPITGEHI  360
FQPDELEQLL QSLQDDSPLG STITDVPQSS LTNSVQPEDD FLMFHDAPFD STMFNDGFGQ  420
SAGFLGSPVT NLSGIGMVDD GMPYYDAIDD NLFNDMMCSG QQSAGSGSHL FNGPVLSQEV  480
NNTTYTYSPT QKVLEPNFVV GAPSSARLPE AGSQLNCNLP DAPARRGAIV NHFVKVLDSI  540
TGPNAFASEF PPNLRKSLAP ISGAHPNTIS VSTEVISMEK GSLTVASRQD KWSFQKGEDM  600
ELLFSTGSEP GTRMHCGGCN TITAVLRSGF CLFFLSAIML LVSCEVGLCI YGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-462817714168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g12470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573214.10.0NAC domain-containing protein 53
TrEMBLI1I0150.0I1I015_BRADI; Uncharacterized protein
STRINGBRADI3G12470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Representative plantOGRP1446944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-82NAC domain containing protein 2