PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g12566.1.p
Common NameBRADI_3g12566, LOC104584009
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 295aa    MW: 31812.9 Da    PI: 5.1284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g12566.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-17154202455
               AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        GVr ++ +g+++AeIrd + ng  +r++lg+f+t+  Aa a+++a+++l+g
  Bradi3g12566.1.p 154 IGVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFDTPHAAALAYDQAALALRG 202
                       6******.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-12152202IPR001471AP2/ERF domain
PROSITE profilePS5103221.364152210IPR001471AP2/ERF domain
PRINTSPR003674.5E-7153164IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21153211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-27155210IPR001471AP2/ERF domain
CDDcd000182.18E-15155211No hitNo description
SMARTSM003803.0E-32155216IPR001471AP2/ERF domain
PRINTSPR003674.5E-7176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
METPLCYDEY SSSSSSSYYV YSDDDRVAYT DQTLVQYGLP QPPLSLQYPN SYHDHQSLSS  60
SSCHYDGDQY YSMAASFQHQ QQLHFGDMDH FSALMEATSI SSTSTRSPHP APDASCYSWD  120
ATAPPAVEAP ERSSSSSSVV TSTGGGGGGA PDLIGVRKRP WGKYAAEIRD STRNGARVWL  180
GTFDTPHAAA LAYDQAALAL RGPAAVLNFP VGRVQDSLDG LGLGGEDSPA LALKRRHCIR  240
KRNPKNSSRM PAAARRQNRE KLQEAAAAAS SACVLELEDL GEDYLQELLA FCDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-23144210472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g12566.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236388.10.0ethylene-responsive transcription factor 2
TrEMBLA0A0Q3F5230.0A0A0Q3F523_BRADI; Uncharacterized protein
STRINGEMT295152e-68(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-27ethylene response factor 1