PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g12680.1.p
Common NameBRADI_3g12680, LOC100831856
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 214aa    MW: 22859.3 Da    PI: 8.5588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g12680.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-183989155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++ a+k+l+g
  Bradi3g12680.1.p 39 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSTALDAARAYDSAAKALYG 89
                      679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5474097IPR001471AP2/ERF domain
SMARTSM003802.4E-3140103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-284196IPR001471AP2/ERF domain
CDDcd000185.34E-244197No hitNo description
PfamPF008472.8E-124189IPR001471AP2/ERF domain
PRINTSPR003671.3E-94152IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-194196IPR016177DNA-binding domain
PRINTSPR003671.3E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAERAASRGR QGNSRKCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG KWVAEIREPN  60
RGARLWLGTF STALDAARAY DSAAKALYGD CARLNLAGGT NNPVLAPPAT AAATSSETQS  120
YSSNSSSGAN SDYYYYYNEY LNGNNGGGAW ISSAAPPAVE DEDFDTYVRR LPKAEDFGLQ  180
AFLQNMPFDV LAEASGTAAG AGIWEPSCDM AAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-144196662ATERF1
3gcc_A3e-144196662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g12680.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081432e-89AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046232e-89AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054112e-89AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149642e-89AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393752e-89AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126162e-89CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571275.11e-155dehydration-responsive element-binding protein 2C
SwissprotQ84ZA12e-72DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLI1I0481e-154I1I048_BRADI; Uncharacterized protein
STRINGBRADI3G12680.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.14e-29ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]