PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g14290.1.p
Common NameBRADI_3g14290, LOC100824714
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LSD
Protein Properties Length: 132aa    MW: 14167.2 Da    PI: 9.0828
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g14290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD127.64.9e-092347125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gC tlL Y+rGA ++RC+ C  V
  Bradi3g14290.1.p 23 CSGCLTLLYYTRGAANIRCSRCRVV 47
                      **********************987 PP
2zf-LSD140.44.8e-136184124
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                      Cg Crt+L+YP+GA  VRCa C++
  Bradi3g14290.1.p 61 CGRCRTTLMYPPGAVTVRCATCQH 84
                      ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.1E-112148IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-82347IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.0E-115885IPR005735Zinc finger, LSD1-type
PfamPF069435.7E-126184IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MPRCTSSIND QPDNTAAMSE MICSGCLTLL YYTRGAANIR CSRCRVVNST RSASQIAHLT  60
CGRCRTTLMY PPGAVTVRCA TCQHDNCVRG QGSSAPPDAR PQTVLVENPR TMNDKGKLVS  120
NVAVGVTSWK R*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g14290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573341.12e-92protein LOL4
SwissprotQ84UR04e-54LOL4_ORYSJ; Protein LOL4
TrEMBLI1I0P34e-91I1I0P3_BRADI; Uncharacterized protein
STRINGBRADI3G14290.17e-92(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.61e-28LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]