PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g14830.1.p
Common NameBRADI_3g14830, LOC100834934
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 393aa    MW: 41908 Da    PI: 9.3386
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g14830.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.5e-1298142347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W++eE++ ++ + k+lG g+W+ I+r     Rt+ q+ s+ qky
  Bradi3g14830.1.p  98 SWSEEEHKNFLLGLKELGRGDWRGISRNYVVSRTPTQVASHAQKY 142
                       7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.4E-42241IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.5482338IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.96890147IPR017930Myb domain
SuperFamilySSF466897.8E-1592148IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-1794146IPR006447Myb domain, plants
SMARTSM007173.2E-995145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-897141IPR009057Homeodomain-like
CDDcd001672.75E-898143No hitNo description
PfamPF002491.3E-998142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MTRDGVPPTA PAPAGGASGD GPRRCSQCGH HGHNSRTCTA RGPVKLFGVR IGDKPPIRKS  60
ASMGNLAQLA AEGSGGARAG GYGSEGDDDK PHRKRGESWS EEEHKNFLLG LKELGRGDWR  120
GISRNYVVSR TPTQVASHAQ KYFIRQSNVH RRKRRSSLFD MVIDDSGDRP LSRSSSQEMP  180
LSRSSSEEVE EYIEDLQPVS APVPVLTSVS VPPTVPVVPP PMPVTASPAP VLTNASAPPV  240
PAMAHQPEEY ESAGSSSNTR EAGTMMPQVM HPYGYPVMFP PPHYAPAFYP VPYYGYAPMF  300
YGPPVPVQAS SQATVQASHE LVRPVATHSG PQINVEDLYG MSELSLKGNS NTNSVAPNLQ  360
LPPKPNGTKD RRSAFHAKAP ANGSSNGLIP AK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g14830.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519520.0JF951952.1 Triticum carthlicum clone TaMYB69 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573373.10.0transcription factor MYBS3
TrEMBLI1I0V80.0I1I0V8_BRADI; Uncharacterized protein
STRINGBRADI3G14830.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Representative plantOGRP1447944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-55MYB_related family protein